miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 8968 0.67 0.829108
Target:  5'- -gGCAGUCCacgCGCUGAUgaGgCCGUg -3'
miRNA:   3'- agCGUCAGGa--GCGGCUAgaUgGGCAg -5'
25207 3' -57.1 NC_005336.1 + 6757 0.68 0.73815
Target:  5'- -aGCAcGUCCUCGCgGAUCcACUgGUUc -3'
miRNA:   3'- agCGU-CAGGAGCGgCUAGaUGGgCAG- -5'
25207 3' -57.1 NC_005336.1 + 90257 0.68 0.757357
Target:  5'- -gGCAGcCCUCGUCGAUCaUGCUCu-- -3'
miRNA:   3'- agCGUCaGGAGCGGCUAG-AUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 14050 0.68 0.757357
Target:  5'- aUGCGGUCCUUGaugaGGUCUaugaGCCCGcCg -3'
miRNA:   3'- aGCGUCAGGAGCgg--CUAGA----UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 5882 0.68 0.766801
Target:  5'- aUGCAGaCCUUGCCGAagaGCgCCGUCc -3'
miRNA:   3'- aGCGUCaGGAGCGGCUagaUG-GGCAG- -5'
25207 3' -57.1 NC_005336.1 + 127730 0.68 0.766801
Target:  5'- cCGCg--CCUCGCUGAUC-GCCCGc- -3'
miRNA:   3'- aGCGucaGGAGCGGCUAGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 54141 0.67 0.785325
Target:  5'- gUCGCAGaaggcguaaaucUCCUCGUCGggCgcguccgGCCCGg- -3'
miRNA:   3'- -AGCGUC------------AGGAGCGGCuaGa------UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 42480 0.67 0.785325
Target:  5'- aCGCGGaggugcCCUCGCCGAgCgugcGCCCGg- -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUaGa---UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 50367 0.69 0.728406
Target:  5'- -aGCGGUCguuucugUCGCCGcggacGUCUGCCuCGUCg -3'
miRNA:   3'- agCGUCAGg------AGCGGC-----UAGAUGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 81155 0.69 0.718579
Target:  5'- cUCGUAGUCCgCGUCGGaCacgaGCCCGUUg -3'
miRNA:   3'- -AGCGUCAGGaGCGGCUaGa---UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 3977 0.69 0.718579
Target:  5'- -gGCAGccgCCcCGCCGGUCcggGCCCGcCg -3'
miRNA:   3'- agCGUCa--GGaGCGGCUAGa--UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 115836 0.72 0.547262
Target:  5'- -aGCAcGUCCUCGCCGG---GCCCGg- -3'
miRNA:   3'- agCGU-CAGGAGCGGCUagaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 128290 0.72 0.547262
Target:  5'- cCGCaAGUCCUCGCUGGUCgagcGCCUa-- -3'
miRNA:   3'- aGCG-UCAGGAGCGGCUAGa---UGGGcag -5'
25207 3' -57.1 NC_005336.1 + 13308 0.71 0.567206
Target:  5'- gCGCGgcGUCCUCGaCCG-UCacGCCCGUCu -3'
miRNA:   3'- aGCGU--CAGGAGC-GGCuAGa-UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 8657 0.7 0.617738
Target:  5'- cUCGUAGUCgUCGUCGGagucgccgccgUCggcCCCGUCg -3'
miRNA:   3'- -AGCGUCAGgAGCGGCU-----------AGau-GGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 115923 0.7 0.638075
Target:  5'- cCGCAGgaagugaCCUCGCCGAccacgaagcUCguggagACCUGUCu -3'
miRNA:   3'- aGCGUCa------GGAGCGGCU---------AGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 35085 0.7 0.658395
Target:  5'- aUCGCcuGGUUCUCGCCGAaCcGCCUGg- -3'
miRNA:   3'- -AGCG--UCAGGAGCGGCUaGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 36571 0.7 0.668527
Target:  5'- gUCGCGGgcuugcgcacgCCggCGCCGAUCUGCuuGa- -3'
miRNA:   3'- -AGCGUCa----------GGa-GCGGCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 89725 0.69 0.692709
Target:  5'- cUCGUAGgCCUucugcaucuccgcaaCGCCGAUCU-CCgCGUCg -3'
miRNA:   3'- -AGCGUCaGGA---------------GCGGCUAGAuGG-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.