miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 44772 0.66 0.875756
Target:  5'- cCGC-GUCCaUGaCCGAcugUCUgaACCCGUCg -3'
miRNA:   3'- aGCGuCAGGaGC-GGCU---AGA--UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 39227 0.66 0.868485
Target:  5'- cCGCGGUgCUCGaggaGGUCUACgCCG-Cg -3'
miRNA:   3'- aGCGUCAgGAGCgg--CUAGAUG-GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 60438 0.66 0.861005
Target:  5'- aUC-CAGUCCUUGaCCGAgcccacgaUGCCCGcCa -3'
miRNA:   3'- -AGcGUCAGGAGC-GGCUag------AUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 36219 0.66 0.861005
Target:  5'- cCGCAGcgCC-CGCaCGGUCUGCuuGa- -3'
miRNA:   3'- aGCGUCa-GGaGCG-GCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 42480 0.67 0.785325
Target:  5'- aCGCGGaggugcCCUCGCCGAgCgugcGCCCGg- -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUaGa---UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 8968 0.67 0.829108
Target:  5'- -gGCAGUCCacgCGCUGAUgaGgCCGUg -3'
miRNA:   3'- agCGUCAGGa--GCGGCUAgaUgGGCAg -5'
25207 3' -57.1 NC_005336.1 + 54141 0.67 0.785325
Target:  5'- gUCGCAGaaggcguaaaucUCCUCGUCGggCgcguccgGCCCGg- -3'
miRNA:   3'- -AGCGUC------------AGGAGCGGCuaGa------UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 127730 0.68 0.766801
Target:  5'- cCGCg--CCUCGCUGAUC-GCCCGc- -3'
miRNA:   3'- aGCGucaGGAGCGGCUAGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 5882 0.68 0.766801
Target:  5'- aUGCAGaCCUUGCCGAagaGCgCCGUCc -3'
miRNA:   3'- aGCGUCaGGAGCGGCUagaUG-GGCAG- -5'
25207 3' -57.1 NC_005336.1 + 14050 0.68 0.757357
Target:  5'- aUGCGGUCCUUGaugaGGUCUaugaGCCCGcCg -3'
miRNA:   3'- aGCGUCAGGAGCgg--CUAGA----UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 15396 0.75 0.374145
Target:  5'- -aGguGUCCUCGCCGAuauugcuggcgUCgaugcgGCCUGUCa -3'
miRNA:   3'- agCguCAGGAGCGGCU-----------AGa-----UGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.