miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 5' -60.5 NC_005336.1 + 22155 0.66 0.75482
Target:  5'- gCGACGAccucuuccgcGuGGUCGcCGCcguaGAGCCCGa -3'
miRNA:   3'- gGCUGCU----------CuCCAGCcGCGa---CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 127272 0.66 0.75482
Target:  5'- uCCGcGCGAGGauGUCGGUgcuGCUGGGUCUGu -3'
miRNA:   3'- -GGC-UGCUCUc-CAGCCG---CGACUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 18980 0.66 0.75482
Target:  5'- aCGuuGAGguAGGUggCGGCGUccacgaagaUGGGCCCGa -3'
miRNA:   3'- gGCugCUC--UCCA--GCCGCG---------ACUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 112814 0.66 0.745559
Target:  5'- uCCGACGcggaccucgaGGAGGcggcaCGGCGC-GAGauCCCGg -3'
miRNA:   3'- -GGCUGC----------UCUCCa----GCCGCGaCUC--GGGC- -5'
25207 5' -60.5 NC_005336.1 + 36206 0.66 0.745559
Target:  5'- gCG-CgGAGAGGUC-GCGCUcGAGCCg- -3'
miRNA:   3'- gGCuG-CUCUCCAGcCGCGA-CUCGGgc -5'
25207 5' -60.5 NC_005336.1 + 125539 0.66 0.745559
Target:  5'- aUGGCGAGGugcaucGUCGaucGCGCgcacGAGCCCGg -3'
miRNA:   3'- gGCUGCUCUc-----CAGC---CGCGa---CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 96011 0.66 0.745559
Target:  5'- uCUGGCGAGAGGaa-GCGCccgcacuGCCCGg -3'
miRNA:   3'- -GGCUGCUCUCCagcCGCGacu----CGGGC- -5'
25207 5' -60.5 NC_005336.1 + 133354 0.66 0.736206
Target:  5'- cUCGcCG-GAGGcggcggCGGCGCUGGGCUUc -3'
miRNA:   3'- -GGCuGCuCUCCa-----GCCGCGACUCGGGc -5'
25207 5' -60.5 NC_005336.1 + 122794 0.66 0.726769
Target:  5'- uCCGuCGuGGGG-CGGCGC-GAGCUg- -3'
miRNA:   3'- -GGCuGCuCUCCaGCCGCGaCUCGGgc -5'
25207 5' -60.5 NC_005336.1 + 130323 0.66 0.726769
Target:  5'- cUCGAgGAGAcg--GGCGC-GAGCCCGg -3'
miRNA:   3'- -GGCUgCUCUccagCCGCGaCUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 64137 0.66 0.722973
Target:  5'- gCCGugcGCGAGGGGcagcggcucuucgCGGCGCUGcgucGGCUCu -3'
miRNA:   3'- -GGC---UGCUCUCCa------------GCCGCGAC----UCGGGc -5'
25207 5' -60.5 NC_005336.1 + 89531 0.66 0.715347
Target:  5'- gCCGACGGcGgcggcugcccGGGUCGaGCGCagcucgccucccGAGCCCGc -3'
miRNA:   3'- -GGCUGCU-C----------UCCAGC-CGCGa-----------CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 95031 0.66 0.714391
Target:  5'- -gGACGGGGuccucguaggacauGGUCGGCGUgGA-CCCGg -3'
miRNA:   3'- ggCUGCUCU--------------CCAGCCGCGaCUcGGGC- -5'
25207 5' -60.5 NC_005336.1 + 74398 0.66 0.707678
Target:  5'- aCCGACGGGcucguGGUCGcGUGCcG-GCgCCGg -3'
miRNA:   3'- -GGCUGCUCu----CCAGC-CGCGaCuCG-GGC- -5'
25207 5' -60.5 NC_005336.1 + 40180 0.66 0.707678
Target:  5'- gUCGAUGu--GGUCGGCGCgcagcgcgcGGCCCu -3'
miRNA:   3'- -GGCUGCucuCCAGCCGCGac-------UCGGGc -5'
25207 5' -60.5 NC_005336.1 + 122702 0.67 0.698041
Target:  5'- gCCGuccuCGAGAcGGaCGcGCGCggacacugcGAGCCCGg -3'
miRNA:   3'- -GGCu---GCUCU-CCaGC-CGCGa--------CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 110067 0.67 0.698041
Target:  5'- -aGACGcAGAGGcccgcgCGGCGCUcGAGCaCGu -3'
miRNA:   3'- ggCUGC-UCUCCa-----GCCGCGA-CUCGgGC- -5'
25207 5' -60.5 NC_005336.1 + 114759 0.67 0.688351
Target:  5'- cCCGAagccCGAGAGGUaaaGGUGgaGguagGGCCUGg -3'
miRNA:   3'- -GGCU----GCUCUCCAg--CCGCgaC----UCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 72512 0.67 0.688351
Target:  5'- aCaACGuGuccauGG-CGGUGCUGGGCCCGc -3'
miRNA:   3'- gGcUGCuCu----CCaGCCGCGACUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 90952 0.67 0.659057
Target:  5'- aCCGGCGcGGGaacucccugggcGUCauGGCGUUGAuGCCCGa -3'
miRNA:   3'- -GGCUGCuCUC------------CAG--CCGCGACU-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.