miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 5' -60.5 NC_005336.1 + 60272 0.67 0.659057
Target:  5'- -gGGCGGGucGUCGGCGa--GGCCCa -3'
miRNA:   3'- ggCUGCUCucCAGCCGCgacUCGGGc -5'
25207 5' -60.5 NC_005336.1 + 996 0.67 0.659057
Target:  5'- uUGGCGAGAGGUCcucuGGCGgUcGGCCg- -3'
miRNA:   3'- gGCUGCUCUCCAG----CCGCgAcUCGGgc -5'
25207 5' -60.5 NC_005336.1 + 996 0.67 0.659057
Target:  5'- uUGGCGAGAGGUCcucuGGCGgUcGGCCg- -3'
miRNA:   3'- gGCUGCUCUCCAG----CCGCgAcUCGGgc -5'
25207 5' -60.5 NC_005336.1 + 37661 0.68 0.639415
Target:  5'- uCCGGCGGcg---CGGCGUcgaUGAGCCCGc -3'
miRNA:   3'- -GGCUGCUcuccaGCCGCG---ACUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 14117 0.68 0.629582
Target:  5'- cUCGGCGGGc-GUCGGaaacaCGCaGAGCCCGu -3'
miRNA:   3'- -GGCUGCUCucCAGCC-----GCGaCUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 78281 0.68 0.629582
Target:  5'- gCGuCGAGucgaAGGUgGGCagcgucacGCUGAGCCCc -3'
miRNA:   3'- gGCuGCUC----UCCAgCCG--------CGACUCGGGc -5'
25207 5' -60.5 NC_005336.1 + 94167 0.68 0.619752
Target:  5'- gCGACGGGAgauuccgcGGUCGGCGCcG-GUgCGg -3'
miRNA:   3'- gGCUGCUCU--------CCAGCCGCGaCuCGgGC- -5'
25207 5' -60.5 NC_005336.1 + 30343 0.68 0.609929
Target:  5'- aCCGACaucGGcAGGUCGcCGUgGAGCCCGc -3'
miRNA:   3'- -GGCUGc--UC-UCCAGCcGCGaCUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 44062 0.68 0.588384
Target:  5'- uCCGGCGAcGAGGgcaucuaccgcgCGGCGCc--GCCCa -3'
miRNA:   3'- -GGCUGCU-CUCCa-----------GCCGCGacuCGGGc -5'
25207 5' -60.5 NC_005336.1 + 110620 0.69 0.580581
Target:  5'- aCGACGAGcucGGagGGCGC-GAGCaCCa -3'
miRNA:   3'- gGCUGCUCu--CCagCCGCGaCUCG-GGc -5'
25207 5' -60.5 NC_005336.1 + 10389 0.69 0.561175
Target:  5'- -gGGCGGGcugucuucgaAGG-CGGCGCgGAGCUCGg -3'
miRNA:   3'- ggCUGCUC----------UCCaGCCGCGaCUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 112883 0.69 0.561175
Target:  5'- uUCGACGcGGAGGUCa-CGCUGuGuCCCGa -3'
miRNA:   3'- -GGCUGC-UCUCCAGccGCGACuC-GGGC- -5'
25207 5' -60.5 NC_005336.1 + 68248 0.69 0.561175
Target:  5'- gCCGACG-GAcG-CGGCGCUGguccuGGCCUGg -3'
miRNA:   3'- -GGCUGCuCUcCaGCCGCGAC-----UCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 126321 0.69 0.551538
Target:  5'- gCCGugGA---GUCGGCGCUc-GCCCGa -3'
miRNA:   3'- -GGCugCUcucCAGCCGCGAcuCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 100783 0.69 0.551538
Target:  5'- uUCGA--GGAGGUCGcGCGCcgGGGCUCGc -3'
miRNA:   3'- -GGCUgcUCUCCAGC-CGCGa-CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 109484 0.69 0.541951
Target:  5'- aCGACGAGGcGGU-GGCuGC-GAGCCCc -3'
miRNA:   3'- gGCUGCUCU-CCAgCCG-CGaCUCGGGc -5'
25207 5' -60.5 NC_005336.1 + 7879 0.7 0.513547
Target:  5'- aCGGCGAGccGcgaGGCcucGCUGGGCCCGg -3'
miRNA:   3'- gGCUGCUCucCag-CCG---CGACUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 78919 0.71 0.449896
Target:  5'- gCCGACGgugugcgcGGAGGU-GGCGC--GGCCCGc -3'
miRNA:   3'- -GGCUGC--------UCUCCAgCCGCGacUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 76810 0.71 0.42397
Target:  5'- aUGGCGAcGGGUCGGCGCUccuuuuacgGGGUCUGu -3'
miRNA:   3'- gGCUGCUcUCCAGCCGCGA---------CUCGGGC- -5'
25207 5' -60.5 NC_005336.1 + 46143 0.71 0.42397
Target:  5'- -aGACGcgcGAGGUCcGCGCUGuuGCCCGc -3'
miRNA:   3'- ggCUGCu--CUCCAGcCGCGACu-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.