miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25209 3' -62.7 NC_005336.1 + 62724 0.66 0.525645
Target:  5'- cGUGGaGCGGCGCaCGCGGcGCGuGCUGc -3'
miRNA:   3'- -UACCgCGUCGCGgGCGUCuCGU-CGAU- -5'
25209 3' -62.7 NC_005336.1 + 99739 0.66 0.525645
Target:  5'- -cGGCGCGGCggauuGCUCGCGcGAggaggcgcuGCGGCUGc -3'
miRNA:   3'- uaCCGCGUCG-----CGGGCGU-CU---------CGUCGAU- -5'
25209 3' -62.7 NC_005336.1 + 75168 0.66 0.525645
Target:  5'- -gGGCGCGGC-UCCGC---GCAGCUGc -3'
miRNA:   3'- uaCCGCGUCGcGGGCGucuCGUCGAU- -5'
25209 3' -62.7 NC_005336.1 + 13630 0.66 0.524666
Target:  5'- -gGGCuGCGGCGgCgGCagcagcgGGAGCAGCa- -3'
miRNA:   3'- uaCCG-CGUCGCgGgCG-------UCUCGUCGau -5'
25209 3' -62.7 NC_005336.1 + 111048 0.66 0.519784
Target:  5'- cUGGCGCGcccguugacggggauGUGCUUguaggucugGCAGAGCAGCa- -3'
miRNA:   3'- uACCGCGU---------------CGCGGG---------CGUCUCGUCGau -5'
25209 3' -62.7 NC_005336.1 + 63309 0.66 0.515892
Target:  5'- -cGGCGCgAGCGCCCGaAGcccCAGCg- -3'
miRNA:   3'- uaCCGCG-UCGCGGGCgUCuc-GUCGau -5'
25209 3' -62.7 NC_005336.1 + 125641 0.66 0.515892
Target:  5'- cAUGGUGUAcGUGCCCcCGGAGgAGCc- -3'
miRNA:   3'- -UACCGCGU-CGCGGGcGUCUCgUCGau -5'
25209 3' -62.7 NC_005336.1 + 16332 0.66 0.515892
Target:  5'- -cGaGCGCacGGCGCCCuccgcgGCGGGGUGGCg- -3'
miRNA:   3'- uaC-CGCG--UCGCGGG------CGUCUCGUCGau -5'
25209 3' -62.7 NC_005336.1 + 71808 0.66 0.515892
Target:  5'- --aGCGCGGCGCCCGgCGcGGCcGCg- -3'
miRNA:   3'- uacCGCGUCGCGGGC-GUcUCGuCGau -5'
25209 3' -62.7 NC_005336.1 + 94081 0.66 0.515892
Target:  5'- -cGGCGCGGUGCCuCGCccGuGCAcGCg- -3'
miRNA:   3'- uaCCGCGUCGCGG-GCGu-CuCGU-CGau -5'
25209 3' -62.7 NC_005336.1 + 66447 0.66 0.515892
Target:  5'- -cGaGCGCGGCGUCCucgGCGGGcacGCGGCa- -3'
miRNA:   3'- uaC-CGCGUCGCGGG---CGUCU---CGUCGau -5'
25209 3' -62.7 NC_005336.1 + 75647 0.66 0.515892
Target:  5'- -cGaCGCAGCGCCgCGaAGAGCcGCUGc -3'
miRNA:   3'- uaCcGCGUCGCGG-GCgUCUCGuCGAU- -5'
25209 3' -62.7 NC_005336.1 + 83947 0.66 0.515892
Target:  5'- -cGGCGCcaccacGCGCCCGUucucGAGCAcGCc- -3'
miRNA:   3'- uaCCGCGu-----CGCGGGCGu---CUCGU-CGau -5'
25209 3' -62.7 NC_005336.1 + 84131 0.66 0.514921
Target:  5'- -cGGCGCAGCGggaggacagaccaCCgcuguCGCGGAGCAcGCg- -3'
miRNA:   3'- uaCCGCGUCGC-------------GG-----GCGUCUCGU-CGau -5'
25209 3' -62.7 NC_005336.1 + 136622 0.66 0.510076
Target:  5'- aGUGGCuGCGgcagcuggagcggcuGCGCCgCGCGGAGCuGUg- -3'
miRNA:   3'- -UACCG-CGU---------------CGCGG-GCGUCUCGuCGau -5'
25209 3' -62.7 NC_005336.1 + 69974 0.66 0.510076
Target:  5'- cGUGGCGguacacggccgugucCAGCGCgCGCAGcAGCAcGUUGu -3'
miRNA:   3'- -UACCGC---------------GUCGCGgGCGUC-UCGU-CGAU- -5'
25209 3' -62.7 NC_005336.1 + 136622 0.66 0.510076
Target:  5'- aGUGGCuGCGgcagcuggagcggcuGCGCCgCGCGGAGCuGUg- -3'
miRNA:   3'- -UACCG-CGU---------------CGCGG-GCGUCUCGuCGau -5'
25209 3' -62.7 NC_005336.1 + 28255 0.66 0.506214
Target:  5'- --cGCGCGGCGUgCGguGGcGCGGCa- -3'
miRNA:   3'- uacCGCGUCGCGgGCguCU-CGUCGau -5'
25209 3' -62.7 NC_005336.1 + 25726 0.66 0.506214
Target:  5'- uUGGCGCGcGCGUCCaggaaggaGCGcAGCAGCa- -3'
miRNA:   3'- uACCGCGU-CGCGGG--------CGUcUCGUCGau -5'
25209 3' -62.7 NC_005336.1 + 129306 0.66 0.506214
Target:  5'- cUGGcCGCAgGCGCCUcuGUGGAGUAcGCUGg -3'
miRNA:   3'- uACC-GCGU-CGCGGG--CGUCUCGU-CGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.