miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2521 5' -46.1 NC_001454.1 + 10353 0.66 0.983056
Target:  5'- gGGgcGcuAGUGGGGGGcgGGAGCggcgGCUGUg -3'
miRNA:   3'- -CCauCu-UCACCUCCU--UUUUGa---UGGCG- -5'
2521 5' -46.1 NC_001454.1 + 28702 0.66 0.983056
Target:  5'- -uUAGGAcGUGGA-GAAAGuUUGCCGCc -3'
miRNA:   3'- ccAUCUU-CACCUcCUUUUuGAUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 31678 0.67 0.964885
Target:  5'- aGUGGAAGgggGGAGGGAGAuuaACgGUu -3'
miRNA:   3'- cCAUCUUCa--CCUCCUUUUugaUGgCG- -5'
2521 5' -46.1 NC_001454.1 + 13057 0.67 0.964885
Target:  5'- -uUGGAcuUGGGGGGAAccGGC-GCCGCu -3'
miRNA:   3'- ccAUCUucACCUCCUUU--UUGaUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 27954 0.68 0.951932
Target:  5'- cGGUGGGccGGUGGAGGu--GGCaguugGCCa- -3'
miRNA:   3'- -CCAUCU--UCACCUCCuuuUUGa----UGGcg -5'
2521 5' -46.1 NC_001454.1 + 22787 0.68 0.946984
Target:  5'- --cAGAcuccgcugacGGUGGAGGAAuuAa-GCCGCg -3'
miRNA:   3'- ccaUCU----------UCACCUCCUUuuUgaUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 14410 0.68 0.93611
Target:  5'- -----uAGUGGGGGugGAAUUACUGCc -3'
miRNA:   3'- ccaucuUCACCUCCuuUUUGAUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 17453 0.69 0.923914
Target:  5'- aGUGGGggcGGUGGGGcGAGAAACgGCgGUg -3'
miRNA:   3'- cCAUCU---UCACCUC-CUUUUUGaUGgCG- -5'
2521 5' -46.1 NC_001454.1 + 32974 0.69 0.910388
Target:  5'- -cUGGAGGUGGAGGGAGAGa---CGg -3'
miRNA:   3'- ccAUCUUCACCUCCUUUUUgaugGCg -5'
2521 5' -46.1 NC_001454.1 + 1861 0.69 0.910388
Target:  5'- aGGaGGAGGaGGAGGAGAAcCUgaggGCCGg -3'
miRNA:   3'- -CCaUCUUCaCCUCCUUUUuGA----UGGCg -5'
2521 5' -46.1 NC_001454.1 + 21956 0.7 0.887648
Target:  5'- cGGUGaAGGUGaGAGGGAG----GCCGCg -3'
miRNA:   3'- -CCAUcUUCAC-CUCCUUUuugaUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 263 0.7 0.879433
Target:  5'- -------aUGGAGGAAAAACUGCUGa -3'
miRNA:   3'- ccaucuucACCUCCUUUUUGAUGGCg -5'
2521 5' -46.1 NC_001454.1 + 24707 0.71 0.843599
Target:  5'- --aGGAcGUGGAGGAAGAAaccAUCGCc -3'
miRNA:   3'- ccaUCUuCACCUCCUUUUUga-UGGCG- -5'
2521 5' -46.1 NC_001454.1 + 23153 0.73 0.759967
Target:  5'- uGGUAGAGcUGGAGGGu-GACaACgCGCg -3'
miRNA:   3'- -CCAUCUUcACCUCCUuuUUGaUG-GCG- -5'
2521 5' -46.1 NC_001454.1 + 12713 0.74 0.713912
Target:  5'- --aAGGAG-GGcGGAGacGAGCUGCCGCu -3'
miRNA:   3'- ccaUCUUCaCCuCCUU--UUUGAUGGCG- -5'
2521 5' -46.1 NC_001454.1 + 7795 0.75 0.666304
Target:  5'- gGGUGGAuGaUGGAGGGAAcgacAACgccCCGCg -3'
miRNA:   3'- -CCAUCUuC-ACCUCCUUU----UUGau-GGCG- -5'
2521 5' -46.1 NC_001454.1 + 6456 0.8 0.363985
Target:  5'- cGUGGGAGuUGGAGGAGAugguggGCCGCu -3'
miRNA:   3'- cCAUCUUC-ACCUCCUUUuuga--UGGCG- -5'
2521 5' -46.1 NC_001454.1 + 31224 0.81 0.318909
Target:  5'- --cGGAAcGUGGAGGAAAAACUAucCCGUg -3'
miRNA:   3'- ccaUCUU-CACCUCCUUUUUGAU--GGCG- -5'
2521 5' -46.1 NC_001454.1 + 17107 1.16 0.00215
Target:  5'- aGGUAGAAGUGGAGGAAAAACUACCGCc -3'
miRNA:   3'- -CCAUCUUCACCUCCUUUUUGAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.