miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2522 3' -55 NC_001454.1 + 34080 0.66 0.63117
Target:  5'- ---aGGACGGGcgCGguGCGGCggaagUGACGa -3'
miRNA:   3'- ggugUCUGUCCa-GCguCGCUG-----ACUGC- -5'
2522 3' -55 NC_001454.1 + 135 0.66 0.608562
Target:  5'- ---aGGACGGGcgCGguGCGGCggaagUGACGg -3'
miRNA:   3'- ggugUCUGUCCa-GCguCGCUG-----ACUGC- -5'
2522 3' -55 NC_001454.1 + 24854 0.66 0.608562
Target:  5'- uUCAguGaACAuGGUUGCGGUGGCaggGGCGg -3'
miRNA:   3'- -GGUguC-UGU-CCAGCGUCGCUGa--CUGC- -5'
2522 3' -55 NC_001454.1 + 20881 0.66 0.597285
Target:  5'- uCCAUGGugGGGUUGCGcuccauGgGACUGGUGg -3'
miRNA:   3'- -GGUGUCugUCCAGCGU------CgCUGACUGC- -5'
2522 3' -55 NC_001454.1 + 15555 0.67 0.530597
Target:  5'- cCCGgcGGCGGGU-GCAGUGGCgggGACGu -3'
miRNA:   3'- -GGUguCUGUCCAgCGUCGCUGa--CUGC- -5'
2522 3' -55 NC_001454.1 + 11265 0.68 0.498248
Target:  5'- aCGCAGcuguGCAuuaguucgcGGUCGCuaagcucgcgacGGCGGCUGGCGc -3'
miRNA:   3'- gGUGUC----UGU---------CCAGCG------------UCGCUGACUGC- -5'
2522 3' -55 NC_001454.1 + 8927 0.68 0.46681
Target:  5'- gCugGGACGGGUUGUcGuCGAC-GACGg -3'
miRNA:   3'- gGugUCUGUCCAGCGuC-GCUGaCUGC- -5'
2522 3' -55 NC_001454.1 + 14304 0.69 0.426556
Target:  5'- aCCACGGAUgugaccuguGGGUCGCAGCagguguACUGGu- -3'
miRNA:   3'- -GGUGUCUG---------UCCAGCGUCGc-----UGACUgc -5'
2522 3' -55 NC_001454.1 + 11429 0.75 0.176085
Target:  5'- -gGCGGACGGGUCGCAGCaGGugaaucccgcuaugUUGGCGg -3'
miRNA:   3'- ggUGUCUGUCCAGCGUCG-CU--------------GACUGC- -5'
2522 3' -55 NC_001454.1 + 17794 1.1 0.000517
Target:  5'- aCCACAGACAGGUCGCAGCGACUGACGc -3'
miRNA:   3'- -GGUGUCUGUCCAGCGUCGCUGACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.