miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25220 3' -54 NC_005336.1 + 109059 0.66 0.955447
Target:  5'- aAGCGCGCG--GGUGAGacgccGUCgUGCGAGc -3'
miRNA:   3'- -UCGCGUGCuuUCACUC-----CAG-GCGCUUc -5'
25220 3' -54 NC_005336.1 + 86882 0.66 0.955447
Target:  5'- gGGCGCGucucCGAGuacacGGUGAGcagccgcaucUCCGCGGAGa -3'
miRNA:   3'- -UCGCGU----GCUU-----UCACUCc---------AGGCGCUUC- -5'
25220 3' -54 NC_005336.1 + 12249 0.66 0.955447
Target:  5'- cGCGCGCGAGc---GGGUCUGCGc-- -3'
miRNA:   3'- uCGCGUGCUUucacUCCAGGCGCuuc -5'
25220 3' -54 NC_005336.1 + 103326 0.66 0.955053
Target:  5'- cGCGCGCGAcauaagcuacuucGAGaccGGGUUCGCGGu- -3'
miRNA:   3'- uCGCGUGCU-------------UUCac-UCCAGGCGCUuc -5'
25220 3' -54 NC_005336.1 + 60236 0.66 0.95264
Target:  5'- uGGCGCAgGAGAGggagcaggugcggguUGAGGcuugggcgggucgUCgGCGAGGc -3'
miRNA:   3'- -UCGCGUgCUUUC---------------ACUCC-------------AGgCGCUUC- -5'
25220 3' -54 NC_005336.1 + 29438 0.66 0.951401
Target:  5'- aGGCGCAUGGAcgcAGacGAGGaCCGCaucGAGGg -3'
miRNA:   3'- -UCGCGUGCUU---UCa-CUCCaGGCG---CUUC- -5'
25220 3' -54 NC_005336.1 + 7606 0.66 0.951401
Target:  5'- cAGCGCGgGAGAGUGGaGUCgagaucggaUGCGAGu -3'
miRNA:   3'- -UCGCGUgCUUUCACUcCAG---------GCGCUUc -5'
25220 3' -54 NC_005336.1 + 3635 0.66 0.951401
Target:  5'- uGGCcgGCGGGAGgGAGGUCUGCGc-- -3'
miRNA:   3'- -UCGcgUGCUUUCaCUCCAGGCGCuuc -5'
25220 3' -54 NC_005336.1 + 61655 0.66 0.951401
Target:  5'- cGCGCGcCGGAcgcgucGGUGuucAGGUCCGgGAu- -3'
miRNA:   3'- uCGCGU-GCUU------UCAC---UCCAGGCgCUuc -5'
25220 3' -54 NC_005336.1 + 3635 0.66 0.951401
Target:  5'- uGGCcgGCGGGAGgGAGGUCUGCGc-- -3'
miRNA:   3'- -UCGcgUGCUUUCaCUCCAGGCGCuuc -5'
25220 3' -54 NC_005336.1 + 18438 0.66 0.951401
Target:  5'- uGCGCggggGCGucuGGGUG-GGUuuGUGAGGg -3'
miRNA:   3'- uCGCG----UGCu--UUCACuCCAggCGCUUC- -5'
25220 3' -54 NC_005336.1 + 36995 0.66 0.95014
Target:  5'- aAGCGCAUGAGcacguccacgucgcAGuUGcgguuguccAGGUCCGCGGu- -3'
miRNA:   3'- -UCGCGUGCUU--------------UC-AC---------UCCAGGCGCUuc -5'
25220 3' -54 NC_005336.1 + 98634 0.66 0.947115
Target:  5'- cAGCGCGCGAAGcgcgcgGAGuccgccUCCGCGAu- -3'
miRNA:   3'- -UCGCGUGCUUUca----CUCc-----AGGCGCUuc -5'
25220 3' -54 NC_005336.1 + 40468 0.66 0.947115
Target:  5'- cGGCGCACGc-AGcGAGcacuucGUCgCGCGAAGa -3'
miRNA:   3'- -UCGCGUGCuuUCaCUC------CAG-GCGCUUC- -5'
25220 3' -54 NC_005336.1 + 124667 0.66 0.947115
Target:  5'- uGCGCugGAAAGcGcGGUgCUGCGGc- -3'
miRNA:   3'- uCGCGugCUUUCaCuCCA-GGCGCUuc -5'
25220 3' -54 NC_005336.1 + 103631 0.66 0.945782
Target:  5'- aGGCGCGCGAggacgccguggucgAGGUGcAGGaguucuccUCCGCGu-- -3'
miRNA:   3'- -UCGCGUGCU--------------UUCAC-UCC--------AGGCGCuuc -5'
25220 3' -54 NC_005336.1 + 102289 0.66 0.942588
Target:  5'- uGCGCGaGAAAGUguccGAGG-CCGUGGAc -3'
miRNA:   3'- uCGCGUgCUUUCA----CUCCaGGCGCUUc -5'
25220 3' -54 NC_005336.1 + 36866 0.66 0.942588
Target:  5'- aGGUGcCGCGGuucuUGuGGUUCGCGAGGa -3'
miRNA:   3'- -UCGC-GUGCUuuc-ACuCCAGGCGCUUC- -5'
25220 3' -54 NC_005336.1 + 133329 0.66 0.942121
Target:  5'- uGGCGCGCG-------GGUCCGCGGAc -3'
miRNA:   3'- -UCGCGUGCuuucacuCCAGGCGCUUc -5'
25220 3' -54 NC_005336.1 + 114087 0.66 0.937815
Target:  5'- cGCGCGCGccaaguacaaGAAGcUGAugaaGG-CCGCGGAGa -3'
miRNA:   3'- uCGCGUGC----------UUUC-ACU----CCaGGCGCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.