miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25228 3' -58.3 NC_005336.1 + 110018 0.66 0.847595
Target:  5'- uCGUGCaGCGAGacgugcugcccGGCgGCGcUCUGCGCGa -3'
miRNA:   3'- cGCACG-CGCUC-----------CUG-UGCaAGGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 97345 0.66 0.847595
Target:  5'- aGCGguagacCGCGGGGu--CGUagcgCCGCGCGa -3'
miRNA:   3'- -CGCac----GCGCUCCuguGCAa---GGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 88535 0.66 0.847595
Target:  5'- gGUGaGCgGCGuGGACugGUagUCCGCGa- -3'
miRNA:   3'- -CGCaCG-CGCuCCUGugCA--AGGCGCgc -5'
25228 3' -58.3 NC_005336.1 + 109055 0.66 0.847595
Target:  5'- cGCGaagcGCGCGGGuGAgACGccgUCGUGCGa -3'
miRNA:   3'- -CGCa---CGCGCUC-CUgUGCaa-GGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 47674 0.66 0.847595
Target:  5'- uGCGccgccgGCaGCGucGACGCGgacuUCUGCGCGc -3'
miRNA:   3'- -CGCa-----CG-CGCucCUGUGCa---AGGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 97959 0.66 0.847595
Target:  5'- cGCGcacUGCGCGAcaaGGAC-CGcUUCGUGCu -3'
miRNA:   3'- -CGC---ACGCGCU---CCUGuGCaAGGCGCGc -5'
25228 3' -58.3 NC_005336.1 + 32035 0.66 0.847595
Target:  5'- cGCGUaCGCGAu--CACGc-CCGCGCGg -3'
miRNA:   3'- -CGCAcGCGCUccuGUGCaaGGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 122238 0.66 0.847595
Target:  5'- cCGUGUccaGCGAGGACAUGgucUUCgGuCGCu -3'
miRNA:   3'- cGCACG---CGCUCCUGUGC---AAGgC-GCGc -5'
25228 3' -58.3 NC_005336.1 + 95576 0.66 0.847595
Target:  5'- cGCGgagucGCcgaagGCGaAGGAgGCGggCCGCGCc -3'
miRNA:   3'- -CGCa----CG-----CGC-UCCUgUGCaaGGCGCGc -5'
25228 3' -58.3 NC_005336.1 + 29711 0.66 0.847595
Target:  5'- cGCGcaCGuCGAGGACGugcuCGagcgCCGCGCGg -3'
miRNA:   3'- -CGCacGC-GCUCCUGU----GCaa--GGCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 18256 0.66 0.847595
Target:  5'- uGCG-GCGCGAGGGCuuGgagUUGgGCa -3'
miRNA:   3'- -CGCaCGCGCUCCUGugCaa-GGCgCGc -5'
25228 3' -58.3 NC_005336.1 + 130466 0.66 0.847595
Target:  5'- cGCGcucUGCGAGGuCACGcgCaGCGCGg -3'
miRNA:   3'- -CGCac-GCGCUCCuGUGCaaGgCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 75968 0.66 0.847595
Target:  5'- cCGUGCGCcgcucCACGUgUCCGCGCc -3'
miRNA:   3'- cGCACGCGcuccuGUGCA-AGGCGCGc -5'
25228 3' -58.3 NC_005336.1 + 14922 0.66 0.847595
Target:  5'- aCGUGuCGCGcAGGgcgccggcGCACGUgcucgCCGUGCc -3'
miRNA:   3'- cGCAC-GCGC-UCC--------UGUGCAa----GGCGCGc -5'
25228 3' -58.3 NC_005336.1 + 12335 0.66 0.847595
Target:  5'- gGCGUGCGCccGuACGCG-UCCGUgGCGu -3'
miRNA:   3'- -CGCACGCGcuCcUGUGCaAGGCG-CGC- -5'
25228 3' -58.3 NC_005336.1 + 87626 0.66 0.84525
Target:  5'- aGCGUgGCcgauauugcccccaGCGcGGGCAgauCGUUCgGCGCGa -3'
miRNA:   3'- -CGCA-CG--------------CGCuCCUGU---GCAAGgCGCGC- -5'
25228 3' -58.3 NC_005336.1 + 127840 0.66 0.839713
Target:  5'- ---cGCGCGGcugcuggccgcGGGCGCGgaccCCGCGCu -3'
miRNA:   3'- cgcaCGCGCU-----------CCUGUGCaa--GGCGCGc -5'
25228 3' -58.3 NC_005336.1 + 60917 0.66 0.839713
Target:  5'- gGCGUGCGCauGGAcCGCGcccccaCGCGCu -3'
miRNA:   3'- -CGCACGCGcuCCU-GUGCaag---GCGCGc -5'
25228 3' -58.3 NC_005336.1 + 61651 0.66 0.839713
Target:  5'- cGCGcGCGCGccGGACGCG-UCgGUGUu -3'
miRNA:   3'- -CGCaCGCGCu-CCUGUGCaAGgCGCGc -5'
25228 3' -58.3 NC_005336.1 + 9648 0.66 0.839713
Target:  5'- -gGUGCGCGAGcGCuGCG-UCCGagaGCGc -3'
miRNA:   3'- cgCACGCGCUCcUG-UGCaAGGCg--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.