miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25234 5' -63.6 NC_005336.1 + 68429 0.66 0.570428
Target:  5'- gGGCgUGgGCGCCaGCGaGAcCUGCGgGAc -3'
miRNA:   3'- -CCG-ACgCGCGG-CGC-CUcGACGCgCUc -5'
25234 5' -63.6 NC_005336.1 + 8287 0.66 0.570428
Target:  5'- cGCUcGCGCGCgggcgCGUGGA-CUGUGCGuGa -3'
miRNA:   3'- cCGA-CGCGCG-----GCGCCUcGACGCGCuC- -5'
25234 5' -63.6 NC_005336.1 + 124046 0.66 0.570428
Target:  5'- cGCgucGCGCgGCCGCGGcGCUcGCucaGCGAa -3'
miRNA:   3'- cCGa--CGCG-CGGCGCCuCGA-CG---CGCUc -5'
25234 5' -63.6 NC_005336.1 + 3717 0.66 0.570428
Target:  5'- cGGgaGagGCGCC-CGGGGCgcggcggGCGCGGu -3'
miRNA:   3'- -CCgaCg-CGCGGcGCCUCGa------CGCGCUc -5'
25234 5' -63.6 NC_005336.1 + 133834 0.66 0.570428
Target:  5'- uGCUGCGCGCgGCGcacGAcGCgaagGCGCu-- -3'
miRNA:   3'- cCGACGCGCGgCGC---CU-CGa---CGCGcuc -5'
25234 5' -63.6 NC_005336.1 + 3717 0.66 0.570428
Target:  5'- cGGgaGagGCGCC-CGGGGCgcggcggGCGCGGu -3'
miRNA:   3'- -CCgaCg-CGCGGcGCCUCGa------CGCGCUc -5'
25234 5' -63.6 NC_005336.1 + 64423 0.66 0.570428
Target:  5'- cGCUGCGCcagaUCGUGG-GCcGCGCGGu -3'
miRNA:   3'- cCGACGCGc---GGCGCCuCGaCGCGCUc -5'
25234 5' -63.6 NC_005336.1 + 64619 0.66 0.570428
Target:  5'- uGGCcGUGUGUcuugugcagcugCGCGGAGCcGCGCccGAGc -3'
miRNA:   3'- -CCGaCGCGCG------------GCGCCUCGaCGCG--CUC- -5'
25234 5' -63.6 NC_005336.1 + 110778 0.66 0.570428
Target:  5'- aGCcGcCGCuGCCGCcGGGCUGCggguGCGAGu -3'
miRNA:   3'- cCGaC-GCG-CGGCGcCUCGACG----CGCUC- -5'
25234 5' -63.6 NC_005336.1 + 65225 0.66 0.570428
Target:  5'- aGCUGCGCGCgCGCGuGcccauGUcGCGCGu- -3'
miRNA:   3'- cCGACGCGCG-GCGC-Cu----CGaCGCGCuc -5'
25234 5' -63.6 NC_005336.1 + 40493 0.66 0.570428
Target:  5'- aGCcGCGCGuCCGCGu-GCauggacaGCGCGAGa -3'
miRNA:   3'- cCGaCGCGC-GGCGCcuCGa------CGCGCUC- -5'
25234 5' -63.6 NC_005336.1 + 1037 0.66 0.569461
Target:  5'- cGGUcGCGgGCgGCGGcccgucccccggaGGgUGCGCGAa -3'
miRNA:   3'- -CCGaCGCgCGgCGCC-------------UCgACGCGCUc -5'
25234 5' -63.6 NC_005336.1 + 1037 0.66 0.569461
Target:  5'- cGGUcGCGgGCgGCGGcccgucccccggaGGgUGCGCGAa -3'
miRNA:   3'- -CCGaCGCgCGgCGCC-------------UCgACGCGCUc -5'
25234 5' -63.6 NC_005336.1 + 74791 0.66 0.569461
Target:  5'- gGGCUGguguuccUGCGCCccgaggacGCGGAGg-GCGUGGGc -3'
miRNA:   3'- -CCGAC-------GCGCGG--------CGCCUCgaCGCGCUC- -5'
25234 5' -63.6 NC_005336.1 + 38099 0.66 0.569461
Target:  5'- uGGCUcaGCGUcgaggagGaCCGCGGGcgcgcGCUGgGCGAGc -3'
miRNA:   3'- -CCGA--CGCG-------C-GGCGCCU-----CGACgCGCUC- -5'
25234 5' -63.6 NC_005336.1 + 9890 0.66 0.567529
Target:  5'- cGGCcGCGgGCgCGCGGAcugaaagugcugguGCaGCaGCGAGu -3'
miRNA:   3'- -CCGaCGCgCG-GCGCCU--------------CGaCG-CGCUC- -5'
25234 5' -63.6 NC_005336.1 + 3795 0.66 0.56078
Target:  5'- cGGCcGCcaGCGCCGCGGccagccGCUGCccGCGc- -3'
miRNA:   3'- -CCGaCG--CGCGGCGCCu-----CGACG--CGCuc -5'
25234 5' -63.6 NC_005336.1 + 83197 0.66 0.56078
Target:  5'- uGGCgcgagccaggGCGCGCggacgacgggcgCGCGGcGCUGcCGCGGc -3'
miRNA:   3'- -CCGa---------CGCGCG------------GCGCCuCGAC-GCGCUc -5'
25234 5' -63.6 NC_005336.1 + 109931 0.66 0.56078
Target:  5'- uGGaaaGUGUGCagcagcaucuCGCGGAGCUGCgGCGGc -3'
miRNA:   3'- -CCga-CGCGCG----------GCGCCUCGACG-CGCUc -5'
25234 5' -63.6 NC_005336.1 + 61013 0.66 0.56078
Target:  5'- cGGCUGCGCGUggUGCGGccgaugguguucAGCcgGUGCa-- -3'
miRNA:   3'- -CCGACGCGCG--GCGCC------------UCGa-CGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.