miRNA display CGI


Results 1 - 20 of 403 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25238 3' -51.3 NC_005336.1 + 115444 0.66 0.989555
Target:  5'- gACGGCGACGcggccGUgcgGAuauucaacucgcaccACCCGCucuGGcCGCg -3'
miRNA:   3'- -UGUCGCUGU-----UAa--UU---------------UGGGCGu--CC-GCG- -5'
25238 3' -51.3 NC_005336.1 + 132640 0.66 0.989555
Target:  5'- uCGGCGACGAgaucuACCugcgauacguggcuuCGCAGGUGg -3'
miRNA:   3'- uGUCGCUGUUaauu-UGG---------------GCGUCCGCg -5'
25238 3' -51.3 NC_005336.1 + 10708 0.66 0.98899
Target:  5'- gGCGGCGGCucgucccAGGCCUGCcGGC-Ca -3'
miRNA:   3'- -UGUCGCUGuuaa---UUUGGGCGuCCGcG- -5'
25238 3' -51.3 NC_005336.1 + 136037 0.66 0.98899
Target:  5'- --cGCGGCGGgguAGCCCaGCccGCGCg -3'
miRNA:   3'- uguCGCUGUUaauUUGGG-CGucCGCG- -5'
25238 3' -51.3 NC_005336.1 + 106925 0.66 0.98899
Target:  5'- -gAGCGACcgcgccGCCgCGCuGGUGCg -3'
miRNA:   3'- ugUCGCUGuuaauuUGG-GCGuCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 14625 0.66 0.98899
Target:  5'- gACGGcCGGCAGUcgcaGAGCauGgAGGCGCu -3'
miRNA:   3'- -UGUC-GCUGUUAa---UUUGggCgUCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 95543 0.66 0.98899
Target:  5'- cGCGGCGcggugcgcgucGCAGU--AGCgCCGCAG-CGCg -3'
miRNA:   3'- -UGUCGC-----------UGUUAauUUG-GGCGUCcGCG- -5'
25238 3' -51.3 NC_005336.1 + 33458 0.66 0.98899
Target:  5'- uGCAGCcGCGAgcgcgagaUGAGCCCcugcgagaucuGCGGGCuGCg -3'
miRNA:   3'- -UGUCGcUGUUa-------AUUUGGG-----------CGUCCG-CG- -5'
25238 3' -51.3 NC_005336.1 + 50205 0.66 0.98899
Target:  5'- cCGGCGGCGAggUGAuACgCGCcGGGaCGCg -3'
miRNA:   3'- uGUCGCUGUUa-AUU-UGgGCG-UCC-GCG- -5'
25238 3' -51.3 NC_005336.1 + 9331 0.66 0.98899
Target:  5'- --cGCGcuGCGcgUGAcCUCGCAGaGCGCg -3'
miRNA:   3'- uguCGC--UGUuaAUUuGGGCGUC-CGCG- -5'
25238 3' -51.3 NC_005336.1 + 10599 0.66 0.98899
Target:  5'- -gAGCGAgGGgaGGACgaCCGCGgcGGCGCg -3'
miRNA:   3'- ugUCGCUgUUaaUUUG--GGCGU--CCGCG- -5'
25238 3' -51.3 NC_005336.1 + 11267 0.66 0.98899
Target:  5'- aGCAGCGAgAGgucGAugCUGUucuuGGCGUu -3'
miRNA:   3'- -UGUCGCUgUUaa-UUugGGCGu---CCGCG- -5'
25238 3' -51.3 NC_005336.1 + 123633 0.66 0.98899
Target:  5'- -uGGCGACGcUgcGGCUcuucaucgaCGCGGGCGUg -3'
miRNA:   3'- ugUCGCUGUuAauUUGG---------GCGUCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 52317 0.66 0.98899
Target:  5'- uACuuCGACGAga----UCGCGGGCGCg -3'
miRNA:   3'- -UGucGCUGUUaauuugGGCGUCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 30890 0.66 0.98899
Target:  5'- cCAGCGugGcgUAGuuGCCC-CAGucgaGCGCg -3'
miRNA:   3'- uGUCGCugUuaAUU--UGGGcGUC----CGCG- -5'
25238 3' -51.3 NC_005336.1 + 23897 0.66 0.98899
Target:  5'- uGCGGCGuCGucgGGGCgcgcgcggCCGCGGGCuGCg -3'
miRNA:   3'- -UGUCGCuGUuaaUUUG--------GGCGUCCG-CG- -5'
25238 3' -51.3 NC_005336.1 + 18458 0.66 0.98899
Target:  5'- -aAGCGACucccu--CgCCGCcGGCGCg -3'
miRNA:   3'- ugUCGCUGuuaauuuG-GGCGuCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 59994 0.66 0.98899
Target:  5'- -gAGCGugGAccu-GCCCGagauaaaGGGCGUg -3'
miRNA:   3'- ugUCGCugUUaauuUGGGCg------UCCGCG- -5'
25238 3' -51.3 NC_005336.1 + 136037 0.66 0.98899
Target:  5'- --cGCGGCGGgguAGCCCaGCccGCGCg -3'
miRNA:   3'- uguCGCUGUUaauUUGGG-CGucCGCG- -5'
25238 3' -51.3 NC_005336.1 + 26103 0.66 0.98899
Target:  5'- aGCAGCuuCAucagcGGGCCCuugauGCAGGUGCu -3'
miRNA:   3'- -UGUCGcuGUuaa--UUUGGG-----CGUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.