miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25238 5' -61 NC_005336.1 + 10628 0.66 0.728475
Target:  5'- gCGCGCCCUCCGcGUcgaagaucaUCGUCuUCcCGu -3'
miRNA:   3'- aGCGCGGGAGGCuCG---------AGCAGcAGcGC- -5'
25238 5' -61 NC_005336.1 + 75532 0.66 0.728475
Target:  5'- -gGCGUCCa-CGAGCUUGgcgcgcgUGUCGCGc -3'
miRNA:   3'- agCGCGGGagGCUCGAGCa------GCAGCGC- -5'
25238 5' -61 NC_005336.1 + 121111 0.66 0.728475
Target:  5'- cCGCGagauCC-CCGAcaGCUCGgCGUCGCu -3'
miRNA:   3'- aGCGCg---GGaGGCU--CGAGCaGCAGCGc -5'
25238 5' -61 NC_005336.1 + 21504 0.66 0.728475
Target:  5'- gCGCGCgCggCCGAGCUCG-CGgaggucauuggCGUGa -3'
miRNA:   3'- aGCGCGgGa-GGCUCGAGCaGCa----------GCGC- -5'
25238 5' -61 NC_005336.1 + 102564 0.66 0.718983
Target:  5'- cCGCGCaCCUggccaCCGcGCUCGUgGagagCGCGa -3'
miRNA:   3'- aGCGCG-GGA-----GGCuCGAGCAgCa---GCGC- -5'
25238 5' -61 NC_005336.1 + 6736 0.66 0.718983
Target:  5'- cCGCGCUCgagcagcagCCGcAGCaCGUCcUCGCGg -3'
miRNA:   3'- aGCGCGGGa--------GGC-UCGaGCAGcAGCGC- -5'
25238 5' -61 NC_005336.1 + 18478 0.66 0.718983
Target:  5'- gCGCGagcaCCUCCGuGGCgcagagugCGUCGUgcaCGCGc -3'
miRNA:   3'- aGCGCg---GGAGGC-UCGa-------GCAGCA---GCGC- -5'
25238 5' -61 NC_005336.1 + 62136 0.66 0.718983
Target:  5'- gCGCGCgCCgUCGAGCUCGUacaugaacaCGUaGCGc -3'
miRNA:   3'- aGCGCG-GGaGGCUCGAGCA---------GCAgCGC- -5'
25238 5' -61 NC_005336.1 + 11737 0.66 0.718983
Target:  5'- gCGCGCUCUCCGcacucAGCaaGUCuagCGCGc -3'
miRNA:   3'- aGCGCGGGAGGC-----UCGagCAGca-GCGC- -5'
25238 5' -61 NC_005336.1 + 12693 0.66 0.718983
Target:  5'- cCGCGCCCgcggCGAGCagcaGUCGcacCGCGu -3'
miRNA:   3'- aGCGCGGGag--GCUCGag--CAGCa--GCGC- -5'
25238 5' -61 NC_005336.1 + 24265 0.66 0.718983
Target:  5'- aCGCGCUCgcCCGuGCgcgCGUC-UCGCa -3'
miRNA:   3'- aGCGCGGGa-GGCuCGa--GCAGcAGCGc -5'
25238 5' -61 NC_005336.1 + 23848 0.66 0.718029
Target:  5'- gUCGCGCagacaggUCUCCacGAGCuUCGUgGUCgGCGa -3'
miRNA:   3'- -AGCGCG-------GGAGG--CUCG-AGCAgCAG-CGC- -5'
25238 5' -61 NC_005336.1 + 35370 0.66 0.709422
Target:  5'- cCGUGCCCUUCuGGCUgGUgCG-CGUGg -3'
miRNA:   3'- aGCGCGGGAGGcUCGAgCA-GCaGCGC- -5'
25238 5' -61 NC_005336.1 + 78100 0.66 0.709422
Target:  5'- cCGUGCgCCU-CGAGCaccuucUCGaCGUCGCGc -3'
miRNA:   3'- aGCGCG-GGAgGCUCG------AGCaGCAGCGC- -5'
25238 5' -61 NC_005336.1 + 78248 0.66 0.709422
Target:  5'- -gGUGCCCgacgCCGAGCUgcagGUCcagCGCGg -3'
miRNA:   3'- agCGCGGGa---GGCUCGAg---CAGca-GCGC- -5'
25238 5' -61 NC_005336.1 + 60877 0.66 0.709422
Target:  5'- gCGCGCcaCCUCCGcGCacacCGUCGgccuagcgCGCGg -3'
miRNA:   3'- aGCGCG--GGAGGCuCGa---GCAGCa-------GCGC- -5'
25238 5' -61 NC_005336.1 + 49799 0.66 0.709422
Target:  5'- gCGCGCgCUCCGAgaagcaGCUCGaCGcCGUc -3'
miRNA:   3'- aGCGCGgGAGGCU------CGAGCaGCaGCGc -5'
25238 5' -61 NC_005336.1 + 51827 0.66 0.6998
Target:  5'- cCGCGCUgUCCGAcgacgaggcGCUCGgCGcCGUGc -3'
miRNA:   3'- aGCGCGGgAGGCU---------CGAGCaGCaGCGC- -5'
25238 5' -61 NC_005336.1 + 7526 0.66 0.6998
Target:  5'- -aGCGCUgcaCGAGCUCGUUG-CGCu -3'
miRNA:   3'- agCGCGGgagGCUCGAGCAGCaGCGc -5'
25238 5' -61 NC_005336.1 + 118156 0.66 0.6998
Target:  5'- cCGCGCCCUC--AGCaUGuaUCGUCGCc -3'
miRNA:   3'- aGCGCGGGAGgcUCGaGC--AGCAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.