miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25250 3' -56 NC_005336.1 + 93594 0.67 0.855638
Target:  5'- uGACCacgcgcgaGGACCucGUGGAgGCG-CUGGCGc -3'
miRNA:   3'- -CUGGg-------UCUGG--CACUUgUGCaGACCGC- -5'
25250 3' -56 NC_005336.1 + 86088 0.67 0.855638
Target:  5'- cGACCUccacGcCCGUGAACAUGUUccGGCGc -3'
miRNA:   3'- -CUGGGu---CuGGCACUUGUGCAGa-CCGC- -5'
25250 3' -56 NC_005336.1 + 53492 0.67 0.855638
Target:  5'- aGACCUGGuCCGUGAacuGCGCGcugaagCUGGgCGu -3'
miRNA:   3'- -CUGGGUCuGGCACU---UGUGCa-----GACC-GC- -5'
25250 3' -56 NC_005336.1 + 123723 0.67 0.839683
Target:  5'- cGACCCGGGaggCGUGcGCACGg--GGCa -3'
miRNA:   3'- -CUGGGUCUg--GCACuUGUGCagaCCGc -5'
25250 3' -56 NC_005336.1 + 112547 0.68 0.831419
Target:  5'- cGACCCAGACgggugcuaccgCGUGGACcccGCGcugCUGcGCGa -3'
miRNA:   3'- -CUGGGUCUG-----------GCACUUG---UGCa--GAC-CGC- -5'
25250 3' -56 NC_005336.1 + 116038 0.68 0.822973
Target:  5'- cGCCCuGGGCgGUGuuCGCG-CUGGCGc -3'
miRNA:   3'- cUGGG-UCUGgCACuuGUGCaGACCGC- -5'
25250 3' -56 NC_005336.1 + 126698 0.68 0.822973
Target:  5'- aGGCU--GGCCGUGuccuGCACG-CUGGCGu -3'
miRNA:   3'- -CUGGguCUGGCACu---UGUGCaGACCGC- -5'
25250 3' -56 NC_005336.1 + 111132 0.68 0.814353
Target:  5'- aGGCCCaAGAgUGUGGGCgaccGCGUCUGuGUGu -3'
miRNA:   3'- -CUGGG-UCUgGCACUUG----UGCAGAC-CGC- -5'
25250 3' -56 NC_005336.1 + 17733 0.68 0.796625
Target:  5'- gGACUCA-AUCGUGcGCGCGUCcGGCGc -3'
miRNA:   3'- -CUGGGUcUGGCACuUGUGCAGaCCGC- -5'
25250 3' -56 NC_005336.1 + 76570 0.68 0.796625
Target:  5'- -gUCCAGuCCGUGAAgACGUCgcgcaGGUGc -3'
miRNA:   3'- cuGGGUCuGGCACUUgUGCAGa----CCGC- -5'
25250 3' -56 NC_005336.1 + 102419 0.68 0.796625
Target:  5'- cGCCUGGAUgagcaaCGUGAGCAUccagaGUCUGGUGg -3'
miRNA:   3'- cUGGGUCUG------GCACUUGUG-----CAGACCGC- -5'
25250 3' -56 NC_005336.1 + 18740 0.68 0.787534
Target:  5'- cACgCAGGCCucgGcGACGCGUCUGGUGu -3'
miRNA:   3'- cUGgGUCUGGca-C-UUGUGCAGACCGC- -5'
25250 3' -56 NC_005336.1 + 45821 0.69 0.76894
Target:  5'- cGACCgAGuCgGUGcACGCGUCcGGCGc -3'
miRNA:   3'- -CUGGgUCuGgCACuUGUGCAGaCCGC- -5'
25250 3' -56 NC_005336.1 + 135821 0.69 0.749858
Target:  5'- gGGCCCGGACgCGgcgGGGCGgcugcCG-CUGGCGg -3'
miRNA:   3'- -CUGGGUCUG-GCa--CUUGU-----GCaGACCGC- -5'
25250 3' -56 NC_005336.1 + 6524 0.69 0.740157
Target:  5'- cGCCCAGGcCCGUGAGCAUG-CgcaccaGGCc -3'
miRNA:   3'- cUGGGUCU-GGCACUUGUGCaGa-----CCGc -5'
25250 3' -56 NC_005336.1 + 18111 0.69 0.740157
Target:  5'- cACCCGGG-CGUGAACAUGUCcGGg- -3'
miRNA:   3'- cUGGGUCUgGCACUUGUGCAGaCCgc -5'
25250 3' -56 NC_005336.1 + 78136 0.7 0.710524
Target:  5'- -uCCCGGACC-UGAacaccgACGCGUCcGGCGc -3'
miRNA:   3'- cuGGGUCUGGcACU------UGUGCAGaCCGC- -5'
25250 3' -56 NC_005336.1 + 48790 0.7 0.69042
Target:  5'- gGGCCagaAGACCGUGGGCGCG-CUcGUGa -3'
miRNA:   3'- -CUGGg--UCUGGCACUUGUGCaGAcCGC- -5'
25250 3' -56 NC_005336.1 + 102817 0.71 0.670121
Target:  5'- uACCCGGACCGcGAcucGCugGUCUGccaccGCGu -3'
miRNA:   3'- cUGGGUCUGGCaCU---UGugCAGAC-----CGC- -5'
25250 3' -56 NC_005336.1 + 128016 0.71 0.670121
Target:  5'- cGGCCacgcgcgAGugCGUGAugGCG-CUGGCGc -3'
miRNA:   3'- -CUGGg------UCugGCACUugUGCaGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.