miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25250 3' -56 NC_005336.1 + 6524 0.69 0.740157
Target:  5'- cGCCCAGGcCCGUGAGCAUG-CgcaccaGGCc -3'
miRNA:   3'- cUGGGUCU-GGCACUUGUGCaGa-----CCGc -5'
25250 3' -56 NC_005336.1 + 14905 0.89 0.061078
Target:  5'- aGACCCAGACCGUGAACACGUgUcGCGc -3'
miRNA:   3'- -CUGGGUCUGGCACUUGUGCAgAcCGC- -5'
25250 3' -56 NC_005336.1 + 16198 0.66 0.904812
Target:  5'- cGCCCacGGACUucacGAGCACGUCcgcgGGCGu -3'
miRNA:   3'- cUGGG--UCUGGca--CUUGUGCAGa---CCGC- -5'
25250 3' -56 NC_005336.1 + 17733 0.68 0.796625
Target:  5'- gGACUCA-AUCGUGcGCGCGUCcGGCGc -3'
miRNA:   3'- -CUGGGUcUGGCACuUGUGCAGaCCGC- -5'
25250 3' -56 NC_005336.1 + 18111 0.69 0.740157
Target:  5'- cACCCGGG-CGUGAACAUGUCcGGg- -3'
miRNA:   3'- cUGGGUCUgGCACUUGUGCAGaCCgc -5'
25250 3' -56 NC_005336.1 + 18740 0.68 0.787534
Target:  5'- cACgCAGGCCucgGcGACGCGUCUGGUGu -3'
miRNA:   3'- cUGgGUCUGGca-C-UUGUGCAGACCGC- -5'
25250 3' -56 NC_005336.1 + 22994 0.66 0.885071
Target:  5'- -uCCCgAGACCGcgcucugGAGCAgcCGUCUgGGCGa -3'
miRNA:   3'- cuGGG-UCUGGCa------CUUGU--GCAGA-CCGC- -5'
25250 3' -56 NC_005336.1 + 34225 0.66 0.885071
Target:  5'- cGGCCCGGcGCCGaggUGAcgcgGCACGcgCUGGaCGg -3'
miRNA:   3'- -CUGGGUC-UGGC---ACU----UGUGCa-GACC-GC- -5'
25250 3' -56 NC_005336.1 + 34385 0.67 0.870783
Target:  5'- cGCCCAGGCCGc--GCACGUCcugcuccucGGUGa -3'
miRNA:   3'- cUGGGUCUGGCacuUGUGCAGa--------CCGC- -5'
25250 3' -56 NC_005336.1 + 41760 0.66 0.885071
Target:  5'- cGGCCgCGGccACCGcGAGCGCGUCcagguugGGCa -3'
miRNA:   3'- -CUGG-GUC--UGGCaCUUGUGCAGa------CCGc -5'
25250 3' -56 NC_005336.1 + 41801 0.66 0.884377
Target:  5'- aGGCCCgugcccgagaagaAGACCGUGGACACGagcaCgaaGCGg -3'
miRNA:   3'- -CUGGG-------------UCUGGCACUUGUGCa---Gac-CGC- -5'
25250 3' -56 NC_005336.1 + 44521 0.66 0.885071
Target:  5'- aGACCCGGACCccggcGUGcgcgacAACGCGUCc-GCGa -3'
miRNA:   3'- -CUGGGUCUGG-----CAC------UUGUGCAGacCGC- -5'
25250 3' -56 NC_005336.1 + 45821 0.69 0.76894
Target:  5'- cGACCgAGuCgGUGcACGCGUCcGGCGc -3'
miRNA:   3'- -CUGGgUCuGgCACuUGUGCAGaCCGC- -5'
25250 3' -56 NC_005336.1 + 48790 0.7 0.69042
Target:  5'- gGGCCagaAGACCGUGGGCGCG-CUcGUGa -3'
miRNA:   3'- -CUGGg--UCUGGCACUUGUGCaGAcCGC- -5'
25250 3' -56 NC_005336.1 + 53492 0.67 0.855638
Target:  5'- aGACCUGGuCCGUGAacuGCGCGcugaagCUGGgCGu -3'
miRNA:   3'- -CUGGGUCuGGCACU---UGUGCa-----GACC-GC- -5'
25250 3' -56 NC_005336.1 + 65992 0.67 0.870783
Target:  5'- uGGCCgGcGCCGUGGAgGCG-CUGcGCGg -3'
miRNA:   3'- -CUGGgUcUGGCACUUgUGCaGAC-CGC- -5'
25250 3' -56 NC_005336.1 + 68492 0.66 0.884377
Target:  5'- aACCCGGccauGCUgcgcgcguucgcgGUGGGCugGUUUGGCGc -3'
miRNA:   3'- cUGGGUC----UGG-------------CACUUGugCAGACCGC- -5'
25250 3' -56 NC_005336.1 + 68686 0.67 0.855638
Target:  5'- cACCCGGACUGgGAGCcggucaucgagACG-CUGGUGg -3'
miRNA:   3'- cUGGGUCUGGCaCUUG-----------UGCaGACCGC- -5'
25250 3' -56 NC_005336.1 + 71921 0.71 0.618981
Target:  5'- aGCCUGGACCGcGucgGCGCGgcgCUGGCGu -3'
miRNA:   3'- cUGGGUCUGGCaCu--UGUGCa--GACCGC- -5'
25250 3' -56 NC_005336.1 + 75597 0.67 0.863315
Target:  5'- cGCUCAG-CCGgucGAACAgcagccUGUCUGGCGc -3'
miRNA:   3'- cUGGGUCuGGCa--CUUGU------GCAGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.