miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25250 5' -58.3 NC_005336.1 + 121029 0.66 0.818282
Target:  5'- gGGUGCccgucaccgacauguGCGUGCacaccagacgcgUCGCCGaggccugcgugcGCCAGAACu -3'
miRNA:   3'- -CCGCG---------------UGCACG------------AGCGGCa-----------CGGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 71992 0.66 0.817426
Target:  5'- cGCGCGCGUGCaucguuucgaccgagCGCUGcgGCUGGAc- -3'
miRNA:   3'- cCGCGUGCACGa--------------GCGGCa-CGGUCUug -5'
25250 5' -58.3 NC_005336.1 + 64499 0.66 0.816569
Target:  5'- cGUGCAcuuCGUGgUCG-CGcGCCAGGACu -3'
miRNA:   3'- cCGCGU---GCACgAGCgGCaCGGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 55264 0.66 0.816569
Target:  5'- --aGCGCGUGCgcgCGCUGUuCgAGGACc -3'
miRNA:   3'- ccgCGUGCACGa--GCGGCAcGgUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 72078 0.66 0.816569
Target:  5'- cGCGCAUGaUGCgcgCGCUGUuCCcGAGCc -3'
miRNA:   3'- cCGCGUGC-ACGa--GCGGCAcGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 86346 0.66 0.816569
Target:  5'- gGGCGCGucCGUGacca-CGUGCCGGAAg -3'
miRNA:   3'- -CCGCGU--GCACgagcgGCACGGUCUUg -5'
25250 5' -58.3 NC_005336.1 + 95550 0.66 0.816569
Target:  5'- cGGUGCGCGUcGCaguagCGCCGcaGCgCGGAGu -3'
miRNA:   3'- -CCGCGUGCA-CGa----GCGGCa-CG-GUCUUg -5'
25250 5' -58.3 NC_005336.1 + 109950 0.66 0.816569
Target:  5'- uGCGCGCG-GCUCGUC-UGCgAGuGGCc -3'
miRNA:   3'- cCGCGUGCaCGAGCGGcACGgUC-UUG- -5'
25250 5' -58.3 NC_005336.1 + 84549 0.66 0.816569
Target:  5'- cGCGCACGcGCUUGCUG-GUgAGGu- -3'
miRNA:   3'- cCGCGUGCaCGAGCGGCaCGgUCUug -5'
25250 5' -58.3 NC_005336.1 + 40695 0.66 0.816569
Target:  5'- cGGCuCACGgaguaCUCGCCGgGCUcGAGCg -3'
miRNA:   3'- -CCGcGUGCac---GAGCGGCaCGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 11887 0.66 0.816569
Target:  5'- cGGCGCGCGcGCa-GuuGUGCCGc--- -3'
miRNA:   3'- -CCGCGUGCaCGagCggCACGGUcuug -5'
25250 5' -58.3 NC_005336.1 + 95592 0.66 0.816569
Target:  5'- gGGCGCGgG-GuCUCGCCGcGCgGGcaGACa -3'
miRNA:   3'- -CCGCGUgCaC-GAGCGGCaCGgUC--UUG- -5'
25250 5' -58.3 NC_005336.1 + 9737 0.66 0.816569
Target:  5'- -uCGCGCGUccacGCUcgCGCCGgcaGCCAGcAGCg -3'
miRNA:   3'- ccGCGUGCA----CGA--GCGGCa--CGGUC-UUG- -5'
25250 5' -58.3 NC_005336.1 + 133360 0.66 0.813987
Target:  5'- gGGCGC-UGcGCUCGCggcgucguggaauuCGUGCUcGAGCg -3'
miRNA:   3'- -CCGCGuGCaCGAGCG--------------GCACGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 62076 0.66 0.81139
Target:  5'- cGGCGCGCG-GCcaUCGCCGccuucgugacgcacgUGCgC-GAGCg -3'
miRNA:   3'- -CCGCGUGCaCG--AGCGGC---------------ACG-GuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 15017 0.66 0.807905
Target:  5'- cGGCGCGCGgGCggCGUCGgcgcgcGCCccGGGCg -3'
miRNA:   3'- -CCGCGUGCaCGa-GCGGCa-----CGGu-CUUG- -5'
25250 5' -58.3 NC_005336.1 + 99375 0.66 0.807905
Target:  5'- cGCGCACGcUGCgugUGCgCGUGCgggCGGGAg -3'
miRNA:   3'- cCGCGUGC-ACGa--GCG-GCACG---GUCUUg -5'
25250 5' -58.3 NC_005336.1 + 124962 0.66 0.807905
Target:  5'- cGGgGCAcggcuuCGUGCUCuGCC--GCCAGAugGCg -3'
miRNA:   3'- -CCgCGU------GCACGAG-CGGcaCGGUCU--UG- -5'
25250 5' -58.3 NC_005336.1 + 125487 0.66 0.807905
Target:  5'- gGGUGCGCGUGCgUGCgGU-CCGcAGCg -3'
miRNA:   3'- -CCGCGUGCACGaGCGgCAcGGUcUUG- -5'
25250 5' -58.3 NC_005336.1 + 131927 0.66 0.807905
Target:  5'- aGGCcuCGCG-GCUCGCCGUGgCCu---- -3'
miRNA:   3'- -CCGc-GUGCaCGAGCGGCAC-GGucuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.