miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25250 5' -58.3 NC_005336.1 + 124962 0.66 0.807905
Target:  5'- cGGgGCAcggcuuCGUGCUCuGCC--GCCAGAugGCg -3'
miRNA:   3'- -CCgCGU------GCACGAG-CGGcaCGGUCU--UG- -5'
25250 5' -58.3 NC_005336.1 + 56348 0.66 0.781008
Target:  5'- gGGCagcaGCGCGUGaacggCGCCGUcGCCGaGACc -3'
miRNA:   3'- -CCG----CGUGCACga---GCGGCA-CGGUcUUG- -5'
25250 5' -58.3 NC_005336.1 + 124232 0.66 0.790116
Target:  5'- aGGUGguCGUGCUCagaaccaCCGUGgUGGGGCu -3'
miRNA:   3'- -CCGCguGCACGAGc------GGCACgGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 77321 0.66 0.799085
Target:  5'- aGGCGCGCacGC-CGCaGUGCCGcAGCa -3'
miRNA:   3'- -CCGCGUGcaCGaGCGgCACGGUcUUG- -5'
25250 5' -58.3 NC_005336.1 + 131927 0.66 0.807905
Target:  5'- aGGCcuCGCG-GCUCGCCGUGgCCu---- -3'
miRNA:   3'- -CCGc-GUGCaCGAGCGGCAC-GGucuug -5'
25250 5' -58.3 NC_005336.1 + 45139 0.66 0.807905
Target:  5'- aGGCGCAUuauggGUcGCgaCGUCGUgcucaGCCAGGACu -3'
miRNA:   3'- -CCGCGUG-----CA-CGa-GCGGCA-----CGGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 27337 0.66 0.807905
Target:  5'- cGGCGCGagcuUGcGCUCGCUG-GCCAccaGACa -3'
miRNA:   3'- -CCGCGU----GCaCGAGCGGCaCGGUc--UUG- -5'
25250 5' -58.3 NC_005336.1 + 3210 0.66 0.790116
Target:  5'- cGGcCGCGCG-GC-CGCCGUGgCC-GAGu -3'
miRNA:   3'- -CC-GCGUGCaCGaGCGGCAC-GGuCUUg -5'
25250 5' -58.3 NC_005336.1 + 125487 0.66 0.807905
Target:  5'- gGGUGCGCGUGCgUGCgGU-CCGcAGCg -3'
miRNA:   3'- -CCGCGUGCACGaGCGgCAcGGUcUUG- -5'
25250 5' -58.3 NC_005336.1 + 12638 0.66 0.79102
Target:  5'- cGCGcCGCGUGCgcggccucugcgcggCGCUGcGCCGGGGg -3'
miRNA:   3'- cCGC-GUGCACGa--------------GCGGCaCGGUCUUg -5'
25250 5' -58.3 NC_005336.1 + 67982 0.66 0.771768
Target:  5'- -aCGCACGUGgUCgcgGCCGcGCCGGGc- -3'
miRNA:   3'- ccGCGUGCACgAG---CGGCaCGGUCUug -5'
25250 5' -58.3 NC_005336.1 + 15017 0.66 0.807905
Target:  5'- cGGCGCGCGgGCggCGUCGgcgcgcGCCccGGGCg -3'
miRNA:   3'- -CCGCGUGCaCGa-GCGGCa-----CGGu-CUUG- -5'
25250 5' -58.3 NC_005336.1 + 122045 0.66 0.799085
Target:  5'- aGCGU-CGcGCUCG-CGUGCCGGuACg -3'
miRNA:   3'- cCGCGuGCaCGAGCgGCACGGUCuUG- -5'
25250 5' -58.3 NC_005336.1 + 12982 0.66 0.793721
Target:  5'- aGUGgACGUGgUaGCCGUGCCcgcacaccaugacuuGGAACg -3'
miRNA:   3'- cCGCgUGCACgAgCGGCACGG---------------UCUUG- -5'
25250 5' -58.3 NC_005336.1 + 99375 0.66 0.807905
Target:  5'- cGCGCACGcUGCgugUGCgCGUGCgggCGGGAg -3'
miRNA:   3'- cCGCGUGC-ACGa--GCG-GCACG---GUCUUg -5'
25250 5' -58.3 NC_005336.1 + 55264 0.66 0.816569
Target:  5'- --aGCGCGUGCgcgCGCUGUuCgAGGACc -3'
miRNA:   3'- ccgCGUGCACGa--GCGGCAcGgUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 134017 0.66 0.781008
Target:  5'- cGUGCGCGUGggUGCgGUGCgcggccgccugCGGAACu -3'
miRNA:   3'- cCGCGUGCACgaGCGgCACG-----------GUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 60218 0.66 0.781008
Target:  5'- uGGCGCugGgGCUggCGCUG-GCgCAGGAg -3'
miRNA:   3'- -CCGCGugCaCGA--GCGGCaCG-GUCUUg -5'
25250 5' -58.3 NC_005336.1 + 23376 0.66 0.807905
Target:  5'- cGGCGCACGgGCgacuacaagcCGCUGUucagccGCCuGGGCa -3'
miRNA:   3'- -CCGCGUGCaCGa---------GCGGCA------CGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 70154 0.66 0.807905
Target:  5'- cGCGaCGCGcUGCgCGCUGUGCaAGAAg -3'
miRNA:   3'- cCGC-GUGC-ACGaGCGGCACGgUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.