miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25250 5' -58.3 NC_005336.1 + 12790 0.72 0.475714
Target:  5'- -uCGCGCGUGgUCGCCGcGCCcgcGGGCg -3'
miRNA:   3'- ccGCGUGCACgAGCGGCaCGGu--CUUG- -5'
25250 5' -58.3 NC_005336.1 + 130529 0.74 0.347465
Target:  5'- cGCGCGCGgcgGCUgGCCGagaGCCGGAcgACa -3'
miRNA:   3'- cCGCGUGCa--CGAgCGGCa--CGGUCU--UG- -5'
25250 5' -58.3 NC_005336.1 + 125250 0.74 0.363078
Target:  5'- uGGUGCGCGUGaucgUGCCGgGCgCGGAGCu -3'
miRNA:   3'- -CCGCGUGCACga--GCGGCaCG-GUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 28990 0.74 0.371064
Target:  5'- cGGCGC-CGUGU--GUCGUGCgCAGAACu -3'
miRNA:   3'- -CCGCGuGCACGagCGGCACG-GUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 90545 0.73 0.395734
Target:  5'- cGCGCACGuUGgUgGCCGUGaCCAuGAACu -3'
miRNA:   3'- cCGCGUGC-ACgAgCGGCAC-GGU-CUUG- -5'
25250 5' -58.3 NC_005336.1 + 89339 0.73 0.395734
Target:  5'- cGGCGUGC--GCUCGCC--GCCGGAACa -3'
miRNA:   3'- -CCGCGUGcaCGAGCGGcaCGGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 10142 0.73 0.412757
Target:  5'- cGGCGCucgcggcggUGUGCaCGUCGUGCgAGAGCa -3'
miRNA:   3'- -CCGCGu--------GCACGaGCGGCACGgUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 26779 0.72 0.430226
Target:  5'- aGCGgAUGUGCUCGCCcGUGagcaGGGACa -3'
miRNA:   3'- cCGCgUGCACGAGCGG-CACgg--UCUUG- -5'
25250 5' -58.3 NC_005336.1 + 134170 0.72 0.457221
Target:  5'- cGCGCGCGaGCUgGgCGUGgacCCAGAGCa -3'
miRNA:   3'- cCGCGUGCaCGAgCgGCAC---GGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 115830 0.74 0.347465
Target:  5'- cGGCggaGCACGUcCUCGCCGgGCCcGGACg -3'
miRNA:   3'- -CCG---CGUGCAcGAGCGGCaCGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 65232 0.74 0.339841
Target:  5'- cGCGCGCGUGCccaugucgcgcgUCGUCG-GCCuGGACg -3'
miRNA:   3'- cCGCGUGCACG------------AGCGGCaCGGuCUUG- -5'
25250 5' -58.3 NC_005336.1 + 8914 0.74 0.339841
Target:  5'- cGCGCACccagaaGCggucguaGCCGUGCCGGAGCa -3'
miRNA:   3'- cCGCGUGca----CGag-----CGGCACGGUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 9002 0.79 0.174527
Target:  5'- cGGCGCGCGUaGCUCGCCGcgaagGCgCGGAc- -3'
miRNA:   3'- -CCGCGUGCA-CGAGCGGCa----CG-GUCUug -5'
25250 5' -58.3 NC_005336.1 + 100422 0.78 0.202045
Target:  5'- cGGCGCcgcacgcGCGUGCUCGCgGUGCCGc--- -3'
miRNA:   3'- -CCGCG-------UGCACGAGCGgCACGGUcuug -5'
25250 5' -58.3 NC_005336.1 + 32392 0.78 0.202543
Target:  5'- -cCGCAgGUGCUCGuCCGUGCggCAGAGCg -3'
miRNA:   3'- ccGCGUgCACGAGC-GGCACG--GUCUUG- -5'
25250 5' -58.3 NC_005336.1 + 64124 0.76 0.257871
Target:  5'- cGCGCACGaGUUUGCCGUGCgcgaGGGGCa -3'
miRNA:   3'- cCGCGUGCaCGAGCGGCACGg---UCUUG- -5'
25250 5' -58.3 NC_005336.1 + 132272 0.75 0.296664
Target:  5'- uGGaGCGCGUGCUCGCaacCGUGCCAcuggccgacuuGAGCc -3'
miRNA:   3'- -CCgCGUGCACGAGCG---GCACGGU-----------CUUG- -5'
25250 5' -58.3 NC_005336.1 + 124181 0.75 0.309859
Target:  5'- cGGCGCGCGUGCggUCGCgacacgcggacuuCGUGCgAGAguGCg -3'
miRNA:   3'- -CCGCGUGCACG--AGCG-------------GCACGgUCU--UG- -5'
25250 5' -58.3 NC_005336.1 + 75546 0.75 0.310566
Target:  5'- uGGCGCGCGUG-UCGCgCGUGCgCgaggAGAACu -3'
miRNA:   3'- -CCGCGUGCACgAGCG-GCACG-G----UCUUG- -5'
25250 5' -58.3 NC_005336.1 + 130134 0.74 0.332338
Target:  5'- cGCGCGCGUGC-CGCCG-GCUgaucgcgcuuGGGGCg -3'
miRNA:   3'- cCGCGUGCACGaGCGGCaCGG----------UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.