miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 3' -53.4 NC_005336.1 + 119044 0.66 0.965673
Target:  5'- gCAGAUCcgCgCGaCCAGCGgcacggagcacgaCGCGCUGCg -3'
miRNA:   3'- -GUUUAGa-G-GC-GGUCGCag-----------GUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 13290 0.66 0.964333
Target:  5'- --cGUCgCCGCCuaGGUG-CCGCGCgGCg -3'
miRNA:   3'- guuUAGaGGCGG--UCGCaGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 62305 0.66 0.964333
Target:  5'- gGGAUCUCgCGCaCGGCGggcUCCGCg--GCg -3'
miRNA:   3'- gUUUAGAG-GCG-GUCGC---AGGUGugaCG- -5'
25252 3' -53.4 NC_005336.1 + 10042 0.66 0.964333
Target:  5'- gCAGAggUCCa-CGGCGUUCACGuCUGCg -3'
miRNA:   3'- -GUUUagAGGcgGUCGCAGGUGU-GACG- -5'
25252 3' -53.4 NC_005336.1 + 51007 0.66 0.964333
Target:  5'- --cAUCuUCCG-CAGCGggUCCACGCcGCu -3'
miRNA:   3'- guuUAG-AGGCgGUCGC--AGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 97164 0.66 0.964333
Target:  5'- uCGAAgacCUCCG-CGGCG-CCGCGC-GCg -3'
miRNA:   3'- -GUUUa--GAGGCgGUCGCaGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 42650 0.66 0.963992
Target:  5'- gAGGUCUUCGaccgcggcuCCGGCGUgcugcccCgCGCGCUGCg -3'
miRNA:   3'- gUUUAGAGGC---------GGUCGCA-------G-GUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 5528 0.66 0.963992
Target:  5'- gGGGUCUCCGCagucgcccaggucUAGCGUCUggACGucgauguuCUGCg -3'
miRNA:   3'- gUUUAGAGGCG-------------GUCGCAGG--UGU--------GACG- -5'
25252 3' -53.4 NC_005336.1 + 14303 0.66 0.960825
Target:  5'- ---uUCUCUGCCGcuGCGgaCCGCAC-GCa -3'
miRNA:   3'- guuuAGAGGCGGU--CGCa-GGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 42500 0.66 0.960825
Target:  5'- ----gCUCCGCCA-CGgCCGCgcgccACUGCg -3'
miRNA:   3'- guuuaGAGGCGGUcGCaGGUG-----UGACG- -5'
25252 3' -53.4 NC_005336.1 + 18630 0.66 0.960825
Target:  5'- -cGGUCguggUGCCGgagcGCGcCCGCACUGCg -3'
miRNA:   3'- guUUAGag--GCGGU----CGCaGGUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 60866 0.66 0.960825
Target:  5'- --cGUCUCUGCgGGCGcgCCAC-CUccGCg -3'
miRNA:   3'- guuUAGAGGCGgUCGCa-GGUGuGA--CG- -5'
25252 3' -53.4 NC_005336.1 + 99357 0.66 0.960825
Target:  5'- ----cCUCCGgCGugcGCGUCgcgcgCACGCUGCg -3'
miRNA:   3'- guuuaGAGGCgGU---CGCAG-----GUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 103562 0.66 0.960461
Target:  5'- ----cCUCCGCCGcGCGUgcggucaagcagaCCgugcggGCGCUGCg -3'
miRNA:   3'- guuuaGAGGCGGU-CGCA-------------GG------UGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 9719 0.66 0.959357
Target:  5'- --cGUC-CUGCCcgcguuauuucgcGCGUCCACGCUcGCg -3'
miRNA:   3'- guuUAGaGGCGGu------------CGCAGGUGUGA-CG- -5'
25252 3' -53.4 NC_005336.1 + 11755 0.66 0.958609
Target:  5'- nCAAGUCUagcgcgccgcgcagCGCCAGCGccaUCaCGCACUcGCg -3'
miRNA:   3'- -GUUUAGAg-------------GCGGUCGC---AG-GUGUGA-CG- -5'
25252 3' -53.4 NC_005336.1 + 97340 0.66 0.957085
Target:  5'- -cAGUCUCCuGCgaCGGCGcggCCuCGCUGCu -3'
miRNA:   3'- guUUAGAGG-CG--GUCGCa--GGuGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 55656 0.66 0.957085
Target:  5'- ----gCUCCGCgaCAGCGguggucuguccUCC-CGCUGCg -3'
miRNA:   3'- guuuaGAGGCG--GUCGC-----------AGGuGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 95945 0.66 0.957085
Target:  5'- gAAGUCgcaUCCguugGCCAGCG-CCGCAaguUUGCa -3'
miRNA:   3'- gUUUAG---AGG----CGGUCGCaGGUGU---GACG- -5'
25252 3' -53.4 NC_005336.1 + 5808 0.66 0.957085
Target:  5'- -cGAUCUCCGgCGGCaGggCGCACggGCa -3'
miRNA:   3'- guUUAGAGGCgGUCG-CagGUGUGa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.