miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 3' -53.4 NC_005336.1 + 3164 0.69 0.871499
Target:  5'- ----gCUCCGCgCGGCGcagCCGCuccaGCUGCc -3'
miRNA:   3'- guuuaGAGGCG-GUCGCa--GGUG----UGACG- -5'
25252 3' -53.4 NC_005336.1 + 3164 0.69 0.871499
Target:  5'- ----gCUCCGCgCGGCGcagCCGCuccaGCUGCc -3'
miRNA:   3'- guuuaGAGGCG-GUCGCa--GGUG----UGACG- -5'
25252 3' -53.4 NC_005336.1 + 3797 0.68 0.893038
Target:  5'- ------gCCGCCAGCG-CCGCggccagccGCUGCc -3'
miRNA:   3'- guuuagaGGCGGUCGCaGGUG--------UGACG- -5'
25252 3' -53.4 NC_005336.1 + 3797 0.68 0.893038
Target:  5'- ------gCCGCCAGCG-CCGCggccagccGCUGCc -3'
miRNA:   3'- guuuagaGGCGGUCGCaGGUG--------UGACG- -5'
25252 3' -53.4 NC_005336.1 + 3846 0.69 0.871499
Target:  5'- gCAGcgCcgCCGCCgAGCGcCCGCGC-GCg -3'
miRNA:   3'- -GUUuaGa-GGCGG-UCGCaGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 3846 0.69 0.871499
Target:  5'- gCAGcgCcgCCGCCgAGCGcCCGCGC-GCg -3'
miRNA:   3'- -GUUuaGa-GGCGG-UCGCaGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 4209 0.7 0.839651
Target:  5'- ----aCUCCGCCAuuaauaccGcCGUUUACGCUGCc -3'
miRNA:   3'- guuuaGAGGCGGU--------C-GCAGGUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 5528 0.66 0.963992
Target:  5'- gGGGUCUCCGCagucgcccaggucUAGCGUCUggACGucgauguuCUGCg -3'
miRNA:   3'- gUUUAGAGGCG-------------GUCGCAGG--UGU--------GACG- -5'
25252 3' -53.4 NC_005336.1 + 5676 0.71 0.75724
Target:  5'- gGGAgcgCCGCCAGCGUCUcugcgaGCGCcGCg -3'
miRNA:   3'- gUUUagaGGCGGUCGCAGG------UGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 5808 0.66 0.957085
Target:  5'- -cGAUCUCCGgCGGCaGggCGCACggGCa -3'
miRNA:   3'- guUUAGAGGCgGUCG-CagGUGUGa-CG- -5'
25252 3' -53.4 NC_005336.1 + 6089 0.68 0.897757
Target:  5'- ----gCUCCGCCAGCaggcgcgcgcccucgCCGCGCaGCg -3'
miRNA:   3'- guuuaGAGGCGGUCGca-------------GGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 6688 0.67 0.929553
Target:  5'- ------gCCGCCAGCGgcgUCACGCcgugGCa -3'
miRNA:   3'- guuuagaGGCGGUCGCa--GGUGUGa---CG- -5'
25252 3' -53.4 NC_005336.1 + 8780 0.66 0.948891
Target:  5'- gCAGcgCUCCGgC-GUGUCCACgACcGCg -3'
miRNA:   3'- -GUUuaGAGGCgGuCGCAGGUG-UGaCG- -5'
25252 3' -53.4 NC_005336.1 + 9067 0.67 0.939721
Target:  5'- --cGUCUCCagcGCCAGCGg-CAUGCUcGCg -3'
miRNA:   3'- guuUAGAGG---CGGUCGCagGUGUGA-CG- -5'
25252 3' -53.4 NC_005336.1 + 9273 0.7 0.795447
Target:  5'- ---cUCUCgGCCAGcCG-CCGCGCgcgGCg -3'
miRNA:   3'- guuuAGAGgCGGUC-GCaGGUGUGa--CG- -5'
25252 3' -53.4 NC_005336.1 + 9719 0.66 0.959357
Target:  5'- --cGUC-CUGCCcgcguuauuucgcGCGUCCACGCUcGCg -3'
miRNA:   3'- guuUAGaGGCGGu------------CGCAGGUGUGA-CG- -5'
25252 3' -53.4 NC_005336.1 + 10042 0.66 0.964333
Target:  5'- gCAGAggUCCa-CGGCGUUCACGuCUGCg -3'
miRNA:   3'- -GUUUagAGGcgGUCGCAGGUGU-GACG- -5'
25252 3' -53.4 NC_005336.1 + 10375 0.7 0.813658
Target:  5'- gCAGGUCUCCGggAG-GUCCACGC-GCg -3'
miRNA:   3'- -GUUUAGAGGCggUCgCAGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 10470 0.67 0.917794
Target:  5'- -cGGUCUucccgaacUCGCCAGCGuacUCCACAgaggcgcCUGCg -3'
miRNA:   3'- guUUAGA--------GGCGGUCGC---AGGUGU-------GACG- -5'
25252 3' -53.4 NC_005336.1 + 11057 0.66 0.948891
Target:  5'- aCGAAcUUgCGCaCGGacauGUCCACGCUGCc -3'
miRNA:   3'- -GUUUaGAgGCG-GUCg---CAGGUGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.