miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 3' -53.4 NC_005336.1 + 3846 0.69 0.871499
Target:  5'- gCAGcgCcgCCGCCgAGCGcCCGCGC-GCg -3'
miRNA:   3'- -GUUuaGa-GGCGG-UCGCaGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 23975 0.7 0.831174
Target:  5'- gAGAUCggcaCCGCCAGCG--CGCACcGCg -3'
miRNA:   3'- gUUUAGa---GGCGGUCGCagGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 26493 0.7 0.831174
Target:  5'- ---uUC-CCGUCGGCGUCgGUGCUGCg -3'
miRNA:   3'- guuuAGaGGCGGUCGCAGgUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 4209 0.7 0.839651
Target:  5'- ----aCUCCGCCAuuaauaccGcCGUUUACGCUGCc -3'
miRNA:   3'- guuuaGAGGCGGU--------C-GCAGGUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 19213 0.7 0.839651
Target:  5'- -----gUCCGCCGGCGUCgC-CGCcGCg -3'
miRNA:   3'- guuuagAGGCGGUCGCAG-GuGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 96958 0.69 0.847929
Target:  5'- gAAGUCUUCGCgGG-GUCCGCguuccgcuucguGCUGCc -3'
miRNA:   3'- gUUUAGAGGCGgUCgCAGGUG------------UGACG- -5'
25252 3' -53.4 NC_005336.1 + 71371 0.69 0.856001
Target:  5'- gCAGGUCU-CGCUGGCGcCCACGCccgacGCg -3'
miRNA:   3'- -GUUUAGAgGCGGUCGCaGGUGUGa----CG- -5'
25252 3' -53.4 NC_005336.1 + 46006 0.69 0.856001
Target:  5'- ----cCUCCGCCA-UGUCUACGgcCUGCa -3'
miRNA:   3'- guuuaGAGGCGGUcGCAGGUGU--GACG- -5'
25252 3' -53.4 NC_005336.1 + 3164 0.69 0.871499
Target:  5'- ----gCUCCGCgCGGCGcagCCGCuccaGCUGCc -3'
miRNA:   3'- guuuaGAGGCG-GUCGCa--GGUG----UGACG- -5'
25252 3' -53.4 NC_005336.1 + 68370 0.7 0.822507
Target:  5'- uCGAcgCgcgggCGCCGGCGgCCGCGCUGUu -3'
miRNA:   3'- -GUUuaGag---GCGGUCGCaGGUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 13439 0.71 0.766021
Target:  5'- cCGAAgg-CCGCCAGCGgcgCCACGucguaggcaguguCUGCu -3'
miRNA:   3'- -GUUUagaGGCGGUCGCa--GGUGU-------------GACG- -5'
25252 3' -53.4 NC_005336.1 + 27483 0.72 0.737398
Target:  5'- -cGAUgUCgGCCAccGCGUCCGCGC-GCa -3'
miRNA:   3'- guUUAgAGgCGGU--CGCAGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 74580 0.74 0.592046
Target:  5'- aGAGUCgCCGCUGGCGUgCGUGCUGCg -3'
miRNA:   3'- gUUUAGaGGCGGUCGCAgGUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 25052 0.73 0.665435
Target:  5'- ----cCUCCGCCAGCGcgCgACAgaGCa -3'
miRNA:   3'- guuuaGAGGCGGUCGCa-GgUGUgaCG- -5'
25252 3' -53.4 NC_005336.1 + 51369 0.73 0.686281
Target:  5'- ----cCUCCGCCGGCGccgaggCCGCGCcGUa -3'
miRNA:   3'- guuuaGAGGCGGUCGCa-----GGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 80302 0.72 0.706938
Target:  5'- --cGUCUCCacgGCCAGCG-CgGCugUGCu -3'
miRNA:   3'- guuUAGAGG---CGGUCGCaGgUGugACG- -5'
25252 3' -53.4 NC_005336.1 + 18072 0.72 0.717172
Target:  5'- ------cCCGCCGGCaGUCCGCGC-GCg -3'
miRNA:   3'- guuuagaGGCGGUCG-CAGGUGUGaCG- -5'
25252 3' -53.4 NC_005336.1 + 25859 0.72 0.717172
Target:  5'- gGAAcaUCCGCCGGaCGUCCACGgCcGCg -3'
miRNA:   3'- gUUUagAGGCGGUC-GCAGGUGU-GaCG- -5'
25252 3' -53.4 NC_005336.1 + 38288 0.72 0.727328
Target:  5'- ---cUCgUCGCCGGCGgcaaCGCGCUGCg -3'
miRNA:   3'- guuuAGaGGCGGUCGCag--GUGUGACG- -5'
25252 3' -53.4 NC_005336.1 + 125331 0.72 0.727328
Target:  5'- aCGAGUgCgugugCUGCgAGCGUCCGCACgucGCg -3'
miRNA:   3'- -GUUUA-Ga----GGCGgUCGCAGGUGUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.