miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 5' -57.9 NC_005336.1 + 36013 0.66 0.848541
Target:  5'- -cGCGUcgcgcaGCGGuACGCgauccCGCAGUGCGCGu -3'
miRNA:   3'- gcUGCA------CGCC-UGCGa----GCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 134419 0.66 0.848541
Target:  5'- gGGCGgcacgccgccGUGGACGCU-GCuGCugGCGg -3'
miRNA:   3'- gCUGCa---------CGCCUGCGAgCGuCGugUGC- -5'
25252 5' -57.9 NC_005336.1 + 93628 0.66 0.848541
Target:  5'- gCGGC-UGCGucGGCGCuUCGU-GCACGCGg -3'
miRNA:   3'- -GCUGcACGC--CUGCG-AGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 130445 0.66 0.848541
Target:  5'- -cACGcGCGGGCuGCUCGCGaucGCGCucuGCGa -3'
miRNA:   3'- gcUGCaCGCCUG-CGAGCGU---CGUG---UGC- -5'
25252 5' -57.9 NC_005336.1 + 21527 0.66 0.848541
Target:  5'- aCGGCGU-CGGccucuuccccGCGCUCG-AGCGCgACGg -3'
miRNA:   3'- -GCUGCAcGCC----------UGCGAGCgUCGUG-UGC- -5'
25252 5' -57.9 NC_005336.1 + 65700 0.66 0.848541
Target:  5'- uCGGCG-G-GGACGCcguccaGCAGCACuGCGg -3'
miRNA:   3'- -GCUGCaCgCCUGCGag----CGUCGUG-UGC- -5'
25252 5' -57.9 NC_005336.1 + 52057 0.66 0.848541
Target:  5'- gCGACGggcccGCGcGCGCcuucguggaCGCGGCACugGg -3'
miRNA:   3'- -GCUGCa----CGCcUGCGa--------GCGUCGUGugC- -5'
25252 5' -57.9 NC_005336.1 + 74479 0.66 0.848541
Target:  5'- -cGCGUGC---UGCUCGCgaccaAGCACGCGg -3'
miRNA:   3'- gcUGCACGccuGCGAGCG-----UCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 11659 0.66 0.848541
Target:  5'- uCGGCG-GCGcgcccaGGCGCgugcgcCGCAGCAgCGCGa -3'
miRNA:   3'- -GCUGCaCGC------CUGCGa-----GCGUCGU-GUGC- -5'
25252 5' -57.9 NC_005336.1 + 101444 0.66 0.847758
Target:  5'- nGugGUcgcgcucccggacGCGGACGCgaagcuggagGCGGUGCGCGg -3'
miRNA:   3'- gCugCA-------------CGCCUGCGag--------CGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 127013 0.66 0.840621
Target:  5'- gGACGagggcGCGGACGUgaacuaCGCGGgccCGCGCGg -3'
miRNA:   3'- gCUGCa----CGCCUGCGa-----GCGUC---GUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 124486 0.66 0.840621
Target:  5'- -cACGUGCcGACagacaGCcUGCGGCACACGu -3'
miRNA:   3'- gcUGCACGcCUG-----CGaGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 77486 0.66 0.840621
Target:  5'- aCGACGccGCGGA-GCcCGCcGUGCGCGa -3'
miRNA:   3'- -GCUGCa-CGCCUgCGaGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 112076 0.66 0.840621
Target:  5'- uCGAgGUcGCGGugcuccucgaaGCGC-CGCAGCACGa- -3'
miRNA:   3'- -GCUgCA-CGCC-----------UGCGaGCGUCGUGUgc -5'
25252 5' -57.9 NC_005336.1 + 95302 0.66 0.840621
Target:  5'- gCGACagGUcGCGGcCGCaCGUcgAGCACACGa -3'
miRNA:   3'- -GCUG--CA-CGCCuGCGaGCG--UCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 106 0.66 0.840621
Target:  5'- cCGACuccGCGGAgGCggcacccCGCAGC-CGCGa -3'
miRNA:   3'- -GCUGca-CGCCUgCGa------GCGUCGuGUGC- -5'
25252 5' -57.9 NC_005336.1 + 123085 0.66 0.840621
Target:  5'- aGACGUGaccgucgaGGACGUgCGCAGgUACAUu -3'
miRNA:   3'- gCUGCACg-------CCUGCGaGCGUC-GUGUGc -5'
25252 5' -57.9 NC_005336.1 + 80479 0.66 0.840621
Target:  5'- aGcACGc-CGGACG-UCGCGGCGCACc -3'
miRNA:   3'- gC-UGCacGCCUGCgAGCGUCGUGUGc -5'
25252 5' -57.9 NC_005336.1 + 106 0.66 0.840621
Target:  5'- cCGACuccGCGGAgGCggcacccCGCAGC-CGCGa -3'
miRNA:   3'- -GCUGca-CGCCUgCGa------GCGUCGuGUGC- -5'
25252 5' -57.9 NC_005336.1 + 134062 0.66 0.840621
Target:  5'- gGugGUGCuGAacCGCUgccacgcggaCGCAGCugACGc -3'
miRNA:   3'- gCugCACGcCU--GCGA----------GCGUCGugUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.