miRNA display CGI


Results 1 - 20 of 311 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 5' -57.9 NC_005336.1 + 14460 1.08 0.002367
Target:  5'- gCGACGUGCGGACGCUCGCAGCACACGc -3'
miRNA:   3'- -GCUGCACGCCUGCGAGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 68370 0.81 0.146137
Target:  5'- uCGACGcGCGGGCGCcggcggccgcgcuguUCGCGGCGCugGg -3'
miRNA:   3'- -GCUGCaCGCCUGCG---------------AGCGUCGUGugC- -5'
25252 5' -57.9 NC_005336.1 + 99450 0.81 0.148368
Target:  5'- -uGCGUGCGGAgggcgacguCGCUCGCGGCACuGCGg -3'
miRNA:   3'- gcUGCACGCCU---------GCGAGCGUCGUG-UGC- -5'
25252 5' -57.9 NC_005336.1 + 139344 0.81 0.152156
Target:  5'- gGACGcGCGGcCGCcCGCGGCACGCGa -3'
miRNA:   3'- gCUGCaCGCCuGCGaGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 139344 0.81 0.152156
Target:  5'- gGACGcGCGGcCGCcCGCGGCACGCGa -3'
miRNA:   3'- gCUGCaCGCCuGCGaGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 77149 0.81 0.156031
Target:  5'- aCGGCGaagaGCGGGCGCUCGCAGaccggGCGCGa -3'
miRNA:   3'- -GCUGCa---CGCCUGCGAGCGUCg----UGUGC- -5'
25252 5' -57.9 NC_005336.1 + 133818 0.81 0.156031
Target:  5'- gCGACGcUGCuGGACGUgcugcgCGCGGCGCACGa -3'
miRNA:   3'- -GCUGC-ACG-CCUGCGa-----GCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 88198 0.8 0.18574
Target:  5'- -cGCGUccaGCGGcgaagGCGCUCGCGGCGCGCGg -3'
miRNA:   3'- gcUGCA---CGCC-----UGCGAGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 28258 0.78 0.225695
Target:  5'- gCGGCGUGCGGugGC--GCGGCACuGCGu -3'
miRNA:   3'- -GCUGCACGCCugCGagCGUCGUG-UGC- -5'
25252 5' -57.9 NC_005336.1 + 10134 0.78 0.242465
Target:  5'- gCGGCGUGCGGucgaccACGCUgGCGGCGuuCACGu -3'
miRNA:   3'- -GCUGCACGCC------UGCGAgCGUCGU--GUGC- -5'
25252 5' -57.9 NC_005336.1 + 135946 0.77 0.254213
Target:  5'- gCGACGcgcGCGGGCGCUCGgCGGCgGCGCu -3'
miRNA:   3'- -GCUGCa--CGCCUGCGAGC-GUCG-UGUGc -5'
25252 5' -57.9 NC_005336.1 + 135946 0.77 0.254213
Target:  5'- gCGACGcgcGCGGGCGCUCGgCGGCgGCGCu -3'
miRNA:   3'- -GCUGCa--CGCCUGCGAGC-GUCG-UGUGc -5'
25252 5' -57.9 NC_005336.1 + 97073 0.77 0.266424
Target:  5'- gCGGCGUGCGGGUGgaCGC-GCACACGc -3'
miRNA:   3'- -GCUGCACGCCUGCgaGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 111999 0.77 0.272705
Target:  5'- uGGCG-GCGGugGCgugUCGcCGGCACGCGa -3'
miRNA:   3'- gCUGCaCGCCugCG---AGC-GUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 103418 0.77 0.279105
Target:  5'- aGGcCGUGCGcGCGCUCGC-GCGCGCGc -3'
miRNA:   3'- gCU-GCACGCcUGCGAGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 101418 0.77 0.279105
Target:  5'- gCGGCGgugGCGGACGCg-GCcGCGCGCGu -3'
miRNA:   3'- -GCUGCa--CGCCUGCGagCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 99639 0.76 0.292262
Target:  5'- gCGGCGUggggcaccucGCGGACGCgCGC-GCGCGCGa -3'
miRNA:   3'- -GCUGCA----------CGCCUGCGaGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 21397 0.76 0.305899
Target:  5'- --uUGUGCGGGCGCucUCGCGGCACuuCGa -3'
miRNA:   3'- gcuGCACGCCUGCG--AGCGUCGUGu-GC- -5'
25252 5' -57.9 NC_005336.1 + 68301 0.76 0.312898
Target:  5'- gGGCGUGCGugcuGGCGCgCGCGGCAgACGc -3'
miRNA:   3'- gCUGCACGC----CUGCGaGCGUCGUgUGC- -5'
25252 5' -57.9 NC_005336.1 + 122530 0.76 0.320018
Target:  5'- gCGGCGcGUGGACGCgaccCGCGcGCGCGCGc -3'
miRNA:   3'- -GCUGCaCGCCUGCGa---GCGU-CGUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.