miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25252 5' -57.9 NC_005336.1 + 106 0.66 0.840621
Target:  5'- cCGACuccGCGGAgGCggcacccCGCAGC-CGCGa -3'
miRNA:   3'- -GCUGca-CGCCUgCGa------GCGUCGuGUGC- -5'
25252 5' -57.9 NC_005336.1 + 106 0.66 0.840621
Target:  5'- cCGACuccGCGGAgGCggcacccCGCAGC-CGCGa -3'
miRNA:   3'- -GCUGca-CGCCUgCGa------GCGUCGuGUGC- -5'
25252 5' -57.9 NC_005336.1 + 3732 0.71 0.544305
Target:  5'- gGGCGcgGCGGGCGCggugagggaaGcCGGCGCGCGg -3'
miRNA:   3'- gCUGCa-CGCCUGCGag--------C-GUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 3732 0.71 0.544305
Target:  5'- gGGCGcgGCGGGCGCggugagggaaGcCGGCGCGCGg -3'
miRNA:   3'- gCUGCa-CGCCUGCGag--------C-GUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 3922 0.67 0.807175
Target:  5'- cCGcGCGUccaGCGGGcCGC-CGCGGCGCAgCGc -3'
miRNA:   3'- -GC-UGCA---CGCCU-GCGaGCGUCGUGU-GC- -5'
25252 5' -57.9 NC_005336.1 + 5805 0.68 0.743059
Target:  5'- aCGGCGcagGCGGccgaggccgGCGC-CGC-GCGCGCGg -3'
miRNA:   3'- -GCUGCa--CGCC---------UGCGaGCGuCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 5814 0.66 0.832517
Target:  5'- cCGGCG-GCaGGGCGCaCG-GGCACAUGa -3'
miRNA:   3'- -GCUGCaCG-CCUGCGaGCgUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 5920 0.68 0.75257
Target:  5'- gCGGCGUcGgGGGCGUcCGCGGCgGCAUu -3'
miRNA:   3'- -GCUGCA-CgCCUGCGaGCGUCG-UGUGc -5'
25252 5' -57.9 NC_005336.1 + 6102 0.75 0.342102
Target:  5'- gCGAUGUGCGGguACGCgCGCAGCA-GCGu -3'
miRNA:   3'- -GCUGCACGCC--UGCGaGCGUCGUgUGC- -5'
25252 5' -57.9 NC_005336.1 + 6617 0.68 0.713998
Target:  5'- -cGCGUGCGucuGCGCccgcgCGCAGCAuCACGu -3'
miRNA:   3'- gcUGCACGCc--UGCGa----GCGUCGU-GUGC- -5'
25252 5' -57.9 NC_005336.1 + 7363 0.73 0.423378
Target:  5'- gGGCGUGCGaGGuCGCcCGcCGGCGCGCGc -3'
miRNA:   3'- gCUGCACGC-CU-GCGaGC-GUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 8527 0.71 0.544305
Target:  5'- aGGCGUGUa-GCGCcgUGCGGCGCACGc -3'
miRNA:   3'- gCUGCACGccUGCGa-GCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 8987 0.7 0.634151
Target:  5'- aGGCc-GUGGACGg-CGCGGCGCGCGu -3'
miRNA:   3'- gCUGcaCGCCUGCgaGCGUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 9020 0.68 0.733454
Target:  5'- gCGGCGUccaugGCGuGGCGUUgGCGGCGCGa- -3'
miRNA:   3'- -GCUGCA-----CGC-CUGCGAgCGUCGUGUgc -5'
25252 5' -57.9 NC_005336.1 + 9510 0.74 0.370823
Target:  5'- cCGACGggcGUGGuCGCUCGCAGCGacucugccacagccCGCGg -3'
miRNA:   3'- -GCUGCa--CGCCuGCGAGCGUCGU--------------GUGC- -5'
25252 5' -57.9 NC_005336.1 + 9791 0.69 0.654282
Target:  5'- -aGCGUcGCGGGCGCga--AGCGCGCGa -3'
miRNA:   3'- gcUGCA-CGCCUGCGagcgUCGUGUGC- -5'
25252 5' -57.9 NC_005336.1 + 9820 0.69 0.654282
Target:  5'- gCGGCGUGUugccgauucGGuuccGCGCUCGCGGCGaGCa -3'
miRNA:   3'- -GCUGCACG---------CC----UGCGAGCGUCGUgUGc -5'
25252 5' -57.9 NC_005336.1 + 10123 0.7 0.614015
Target:  5'- uGugGcUGCGcccaggagucGGCGCUCGCGGCgguguGCACGu -3'
miRNA:   3'- gCugC-ACGC----------CUGCGAGCGUCG-----UGUGC- -5'
25252 5' -57.9 NC_005336.1 + 10134 0.78 0.242465
Target:  5'- gCGGCGUGCGGucgaccACGCUgGCGGCGuuCACGu -3'
miRNA:   3'- -GCUGCACGCC------UGCGAgCGUCGU--GUGC- -5'
25252 5' -57.9 NC_005336.1 + 10522 0.68 0.703177
Target:  5'- -uGCGUcGCGGGCGCggGCGGCggggcuaGCGCGu -3'
miRNA:   3'- gcUGCA-CGCCUGCGagCGUCG-------UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.