miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25256 3' -62.8 NC_005336.1 + 100540 0.66 0.628568
Target:  5'- -aCGCCgUGCccGCGCGGAagaagcucgacgacgUCGCGGa -3'
miRNA:   3'- agGCGGaGCGucCGCGCCU---------------AGCGCCg -5'
25256 3' -62.8 NC_005336.1 + 51849 0.66 0.624657
Target:  5'- gUgGUCUgGguGGCGCG---CGCGGCg -3'
miRNA:   3'- aGgCGGAgCguCCGCGCcuaGCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 106670 0.66 0.624657
Target:  5'- cCCGCCgccgUGC-GGCGgGGAgugagCGCGaGUu -3'
miRNA:   3'- aGGCGGa---GCGuCCGCgCCUa----GCGC-CG- -5'
25256 3' -62.8 NC_005336.1 + 6364 0.66 0.624657
Target:  5'- aCCGCCgCGCGGuGCaGCGcGGUCuGCaGGUu -3'
miRNA:   3'- aGGCGGaGCGUC-CG-CGC-CUAG-CG-CCG- -5'
25256 3' -62.8 NC_005336.1 + 41475 0.66 0.624657
Target:  5'- -aCGCuCUCGU--GCGCGGcgUGCGGg -3'
miRNA:   3'- agGCG-GAGCGucCGCGCCuaGCGCCg -5'
25256 3' -62.8 NC_005336.1 + 114499 0.66 0.624657
Target:  5'- aUCGCguuCUCGCGGcGCGUGGggCGCuGUc -3'
miRNA:   3'- aGGCG---GAGCGUC-CGCGCCuaGCGcCG- -5'
25256 3' -62.8 NC_005336.1 + 63862 0.66 0.624657
Target:  5'- gCCGCggucUUCGCGuguaccGGCGC--AUCGCGGCc -3'
miRNA:   3'- aGGCG----GAGCGU------CCGCGccUAGCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 27224 0.66 0.624657
Target:  5'- cUCC-CCaggucgCGCAGcaGCGCGGGguccaCGCGGUa -3'
miRNA:   3'- -AGGcGGa-----GCGUC--CGCGCCUa----GCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 102343 0.66 0.623679
Target:  5'- -aCGaCCUCGCGcGCGCGGG-CGUcagcacgGGCg -3'
miRNA:   3'- agGC-GGAGCGUcCGCGCCUaGCG-------CCG- -5'
25256 3' -62.8 NC_005336.1 + 30682 0.66 0.614883
Target:  5'- -gCGCUgCGUgcucuucaaGGGCGCGGcgGUgGCGGCc -3'
miRNA:   3'- agGCGGaGCG---------UCCGCGCC--UAgCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 71325 0.66 0.614883
Target:  5'- gCCGgguUCUCGCAGaGcCGCGuc-CGCGGCg -3'
miRNA:   3'- aGGC---GGAGCGUC-C-GCGCcuaGCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 85609 0.66 0.614883
Target:  5'- uUCCGCCgUCGCGcGGCGCcgccGAccgCGCccgGGCc -3'
miRNA:   3'- -AGGCGG-AGCGU-CCGCGc---CUa--GCG---CCG- -5'
25256 3' -62.8 NC_005336.1 + 69044 0.66 0.614883
Target:  5'- -gCGCgCUCGUacAGcGCGCGGuUCuCGGCg -3'
miRNA:   3'- agGCG-GAGCG--UC-CGCGCCuAGcGCCG- -5'
25256 3' -62.8 NC_005336.1 + 120612 0.66 0.614883
Target:  5'- gCCGUCgagaUGCucGCGCaGAUgCGCGGCg -3'
miRNA:   3'- aGGCGGa---GCGucCGCGcCUA-GCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 22328 0.66 0.614883
Target:  5'- gCCGCCgagCGCGGGCuuuCGcugCGCGuGCa -3'
miRNA:   3'- aGGCGGa--GCGUCCGc--GCcuaGCGC-CG- -5'
25256 3' -62.8 NC_005336.1 + 87974 0.66 0.614883
Target:  5'- -gCGCCUCGU---CGuCGGAcagCGCGGCg -3'
miRNA:   3'- agGCGGAGCGuccGC-GCCUa--GCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 98654 0.66 0.614883
Target:  5'- gUCCGCCUcCGCGauccGCGCacacGGca-GCGGCg -3'
miRNA:   3'- -AGGCGGA-GCGUc---CGCG----CCuagCGCCG- -5'
25256 3' -62.8 NC_005336.1 + 12719 0.66 0.614883
Target:  5'- aCCGCgUCG-GGGUcuaGCGGGUUGCcGCg -3'
miRNA:   3'- aGGCGgAGCgUCCG---CGCCUAGCGcCG- -5'
25256 3' -62.8 NC_005336.1 + 134219 0.66 0.614883
Target:  5'- cCCGCCUgUGCGGGCGa-GAgCGCGcucGCg -3'
miRNA:   3'- aGGCGGA-GCGUCCGCgcCUaGCGC---CG- -5'
25256 3' -62.8 NC_005336.1 + 94287 0.66 0.606095
Target:  5'- gUCCaGCC-CGCuGGGCGUGGcggggucgucgcccuUCGaCGGCa -3'
miRNA:   3'- -AGG-CGGaGCG-UCCGCGCCu--------------AGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.