miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25256 5' -57.6 NC_005336.1 + 132628 0.66 0.827913
Target:  5'- cCGCGCGCUCguggcaaCUGaCGCggacgugaacuuccgCGGCGAGUa -3'
miRNA:   3'- aGCGCGCGAGa------GGC-GUGa--------------GUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 105328 0.66 0.827067
Target:  5'- cCGCGCgaguGCUCgcugaCCGUGCUCGGUcucGAGg -3'
miRNA:   3'- aGCGCG----CGAGa----GGCGUGAGUCG---UUCa -5'
25256 5' -57.6 NC_005336.1 + 17692 0.66 0.827067
Target:  5'- aCGCGCGCcuggCUCCGUAUgUAGCc--- -3'
miRNA:   3'- aGCGCGCGa---GAGGCGUGaGUCGuuca -5'
25256 5' -57.6 NC_005336.1 + 16615 0.66 0.827067
Target:  5'- gCGCGCGCg-UCCGC-CUCcaacacgcGCGAGg -3'
miRNA:   3'- aGCGCGCGagAGGCGuGAGu-------CGUUCa -5'
25256 5' -57.6 NC_005336.1 + 70413 0.66 0.827067
Target:  5'- gCGCGgGUcCUCCgaGCGC-CGGCAGGa -3'
miRNA:   3'- aGCGCgCGaGAGG--CGUGaGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 134350 0.66 0.827067
Target:  5'- cUGCGCGCUCg-CGCGCgUGGCGAc- -3'
miRNA:   3'- aGCGCGCGAGagGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 11690 0.66 0.827067
Target:  5'- gCGCGCaGCUCgUCCGCguccuuguccuuGCUCuGCAcGUc -3'
miRNA:   3'- aGCGCG-CGAG-AGGCG------------UGAGuCGUuCA- -5'
25256 5' -57.6 NC_005336.1 + 74293 0.66 0.827067
Target:  5'- aCGCGCGUcUUCCGCgacccGCUgCAGCAc-- -3'
miRNA:   3'- aGCGCGCGaGAGGCG-----UGA-GUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 135949 0.66 0.818513
Target:  5'- aCGCGCGCgg---GCGCUCGGCGGc- -3'
miRNA:   3'- aGCGCGCGagaggCGUGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 40148 0.66 0.818513
Target:  5'- cUCGCGCGCg---CGCGCgUCcGCGAGg -3'
miRNA:   3'- -AGCGCGCGagagGCGUG-AGuCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 58502 0.66 0.818513
Target:  5'- gCGCGCGCg---CGCGCUC-GCGGGc -3'
miRNA:   3'- aGCGCGCGagagGCGUGAGuCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 14990 0.66 0.818513
Target:  5'- aCGCGCGUcaUUCCGUACcgCAGguGGa -3'
miRNA:   3'- aGCGCGCGa-GAGGCGUGa-GUCguUCa -5'
25256 5' -57.6 NC_005336.1 + 44467 0.66 0.818513
Target:  5'- cUCGCGCGCgcacaugaUCgCCG-ACUgCGGCAAGg -3'
miRNA:   3'- -AGCGCGCG--------AGaGGCgUGA-GUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 120459 0.66 0.818513
Target:  5'- cUCGgGCGCUacgacgUCCaacaGCACUucugCAGCAAGUg -3'
miRNA:   3'- -AGCgCGCGAg-----AGG----CGUGA----GUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 135949 0.66 0.818513
Target:  5'- aCGCGCGCgg---GCGCUCGGCGGc- -3'
miRNA:   3'- aGCGCGCGagaggCGUGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 46395 0.66 0.818513
Target:  5'- aCGCGCGCgC-CCGCGCggGGCGc-- -3'
miRNA:   3'- aGCGCGCGaGaGGCGUGagUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 73276 0.66 0.818513
Target:  5'- cCGCGCGC---CCGCACccgCAGCucGUg -3'
miRNA:   3'- aGCGCGCGagaGGCGUGa--GUCGuuCA- -5'
25256 5' -57.6 NC_005336.1 + 39144 0.66 0.809787
Target:  5'- gUGCGCGCUCUUCGCggagAC-CAuCGAGg -3'
miRNA:   3'- aGCGCGCGAGAGGCG----UGaGUcGUUCa -5'
25256 5' -57.6 NC_005336.1 + 118218 0.66 0.809787
Target:  5'- -aGgGCGCUCaCCGCGCUgaCGGCGGc- -3'
miRNA:   3'- agCgCGCGAGaGGCGUGA--GUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 31506 0.66 0.809787
Target:  5'- -aGCGCGUa---CGCGCUCAGCAc-- -3'
miRNA:   3'- agCGCGCGagagGCGUGAGUCGUuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.