miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25256 5' -57.6 NC_005336.1 + 11734 1.07 0.002355
Target:  5'- cUCGCGCGCUCUCCGCACUCAGCAAGUc -3'
miRNA:   3'- -AGCGCGCGAGAGGCGUGAGUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 60584 0.82 0.126043
Target:  5'- cUUGUGCGCgacgugCUCCGCGCUCAGCAGcGUc -3'
miRNA:   3'- -AGCGCGCGa-----GAGGCGUGAGUCGUU-CA- -5'
25256 5' -57.6 NC_005336.1 + 80173 0.8 0.167332
Target:  5'- gCGCGCgugguGCUCUCCgGCGCUgAGCAGGUg -3'
miRNA:   3'- aGCGCG-----CGAGAGG-CGUGAgUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 77024 0.78 0.204604
Target:  5'- cCGCGCGa--UCCGCGCUCAuGCAGGUu -3'
miRNA:   3'- aGCGCGCgagAGGCGUGAGU-CGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 11795 0.78 0.225814
Target:  5'- cUCGCGCGUgg-CCGCGCUCGGCGu-- -3'
miRNA:   3'- -AGCGCGCGagaGGCGUGAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 106505 0.75 0.322238
Target:  5'- cUC-CGCGCUCUCCGCgagccuggaccGCUgCAGCAAGc -3'
miRNA:   3'- -AGcGCGCGAGAGGCG-----------UGA-GUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 25398 0.74 0.35266
Target:  5'- gCGCGCGCguuugUUCgCGCGCUCGGCGGc- -3'
miRNA:   3'- aGCGCGCGa----GAG-GCGUGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 5580 0.73 0.393463
Target:  5'- -aGCGCGCUCUcgcCCGCACa-GGCGGGg -3'
miRNA:   3'- agCGCGCGAGA---GGCGUGagUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 95554 0.73 0.41937
Target:  5'- gCGCGCGC-CUCCaGCGC-CAGCAGc- -3'
miRNA:   3'- aGCGCGCGaGAGG-CGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 70153 0.72 0.446285
Target:  5'- aCGCGaCGCgCUgCGCGCUguGCAAGa -3'
miRNA:   3'- aGCGC-GCGaGAgGCGUGAguCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 112361 0.72 0.446285
Target:  5'- gCGCGCGCUCgggcccaugUCCGUGgUCAGCAu-- -3'
miRNA:   3'- aGCGCGCGAG---------AGGCGUgAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 49832 0.72 0.464753
Target:  5'- -aGCGCGCgaccugcugcaUCUCCGCGCUCuuCAAGc -3'
miRNA:   3'- agCGCGCG-----------AGAGGCGUGAGucGUUCa -5'
25256 5' -57.6 NC_005336.1 + 113342 0.72 0.474136
Target:  5'- uUCGCGCGCgugCUCaGCAC-CGGCAAc- -3'
miRNA:   3'- -AGCGCGCGa--GAGgCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 88307 0.72 0.474136
Target:  5'- aUCGCGagguaGgaCUCUGCGCgcagCAGCGAGUg -3'
miRNA:   3'- -AGCGCg----CgaGAGGCGUGa---GUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 70863 0.72 0.474136
Target:  5'- -aGCGUcuGCUCaugUCCGCGCUCGGCGGa- -3'
miRNA:   3'- agCGCG--CGAG---AGGCGUGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 119571 0.72 0.474136
Target:  5'- gUGCGCGCcCUCCGCGCcCAcCGAGg -3'
miRNA:   3'- aGCGCGCGaGAGGCGUGaGUcGUUCa -5'
25256 5' -57.6 NC_005336.1 + 3824 0.72 0.483612
Target:  5'- cCGCGCGCgcccgCCGCGCgCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga--GGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 3824 0.72 0.483612
Target:  5'- cCGCGCGCgcccgCCGCGCgCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga--GGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 19755 0.72 0.493178
Target:  5'- aCGCGCGCUCggugCCGCcCgCGGCGAc- -3'
miRNA:   3'- aGCGCGCGAGa---GGCGuGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 103425 0.71 0.502831
Target:  5'- gCGCGCGCUCg-CGCGCgcgCuGCAGGc -3'
miRNA:   3'- aGCGCGCGAGagGCGUGa--GuCGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.