miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25256 5' -57.6 NC_005336.1 + 3824 0.72 0.483612
Target:  5'- cCGCGCGCgcccgCCGCGCgCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga--GGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 3824 0.72 0.483612
Target:  5'- cCGCGCGCgcccgCCGCGCgCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga--GGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 4028 0.68 0.725024
Target:  5'- gCGCGCGCaCUa-GCAC-CGGCGAGg -3'
miRNA:   3'- aGCGCGCGaGAggCGUGaGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 5580 0.73 0.393463
Target:  5'- -aGCGCGCUCUcgcCCGCACa-GGCGGGg -3'
miRNA:   3'- agCGCGCGAGA---GGCGUGagUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 6535 0.67 0.781746
Target:  5'- gCGCGCGCuUCUCaugcucgaagaagUGCAC-CAGguGGUg -3'
miRNA:   3'- aGCGCGCG-AGAG-------------GCGUGaGUCguUCA- -5'
25256 5' -57.6 NC_005336.1 + 6616 0.67 0.734887
Target:  5'- gCGCGUGCgUCUgcgcCCGCGCgCAGCAu-- -3'
miRNA:   3'- aGCGCGCG-AGA----GGCGUGaGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 7325 0.69 0.643987
Target:  5'- --cUGUGCUCUCCGUcCUCAGCGGc- -3'
miRNA:   3'- agcGCGCGAGAGGCGuGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 8397 0.67 0.782673
Target:  5'- -gGCGuCGCUCUCgCGgACUcCAGCAGc- -3'
miRNA:   3'- agCGC-GCGAGAG-GCgUGA-GUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 8693 0.68 0.684858
Target:  5'- gUCGCGCgGC-CUCCGCAg-CGGCAu-- -3'
miRNA:   3'- -AGCGCG-CGaGAGGCGUgaGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 8905 0.67 0.754336
Target:  5'- cCGCGCGCUCg-CGCACcCAG-AAGc -3'
miRNA:   3'- aGCGCGCGAGagGCGUGaGUCgUUCa -5'
25256 5' -57.6 NC_005336.1 + 8943 0.67 0.782673
Target:  5'- aCGCGgGCUCugUCCGCGUUCAGgAugaAGUa -3'
miRNA:   3'- aGCGCgCGAG--AGGCGUGAGUCgU---UCA- -5'
25256 5' -57.6 NC_005336.1 + 9822 0.66 0.791858
Target:  5'- -gGCGUGUUgccgauucggUUCCGCGCUCgcGGCGAGc -3'
miRNA:   3'- agCGCGCGA----------GAGGCGUGAG--UCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 11690 0.66 0.827067
Target:  5'- gCGCGCaGCUCgUCCGCguccuuguccuuGCUCuGCAcGUc -3'
miRNA:   3'- aGCGCG-CGAG-AGGCG------------UGAGuCGUuCA- -5'
25256 5' -57.6 NC_005336.1 + 11734 1.07 0.002355
Target:  5'- cUCGCGCGCUCUCCGCACUCAGCAAGUc -3'
miRNA:   3'- -AGCGCGCGAGAGGCGUGAGUCGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 11795 0.78 0.225814
Target:  5'- cUCGCGCGUgg-CCGCGCUCGGCGu-- -3'
miRNA:   3'- -AGCGCGCGagaGGCGUGAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 11889 0.68 0.705065
Target:  5'- gCGCGCGCgcaguugugCCGCaccauGCUCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga------GGCG-----UGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 12247 0.67 0.744661
Target:  5'- gUCGCGCGCgagCgggUCUGCGCccgCGGCGAu- -3'
miRNA:   3'- -AGCGCGCGa--G---AGGCGUGa--GUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 12789 0.66 0.791858
Target:  5'- cUCGCGCGUggUCgCCGCGC-CcGCGGGc -3'
miRNA:   3'- -AGCGCGCG--AGaGGCGUGaGuCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 13805 0.67 0.752409
Target:  5'- aCGCGCGCgaaggccgccagCUCCuCGCgCGGCAGGc -3'
miRNA:   3'- aGCGCGCGa-----------GAGGcGUGaGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 14090 0.68 0.705065
Target:  5'- cUCGCGCGCUCaugagGCACgugCGGCAGu- -3'
miRNA:   3'- -AGCGCGCGAGagg--CGUGa--GUCGUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.