miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25256 5' -57.6 NC_005336.1 + 29381 0.69 0.643987
Target:  5'- aCGCGCGC-CgcgCUGCGCaUCAGCGGc- -3'
miRNA:   3'- aGCGCGCGaGa--GGCGUG-AGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 42355 0.7 0.572393
Target:  5'- gCGCGCGCUCUCgGC-CUCcauGCGc-- -3'
miRNA:   3'- aGCGCGCGAGAGgCGuGAGu--CGUuca -5'
25256 5' -57.6 NC_005336.1 + 131884 0.7 0.572393
Target:  5'- gUCGCGCagGCUCUCgagcaCGCGCUggacgccgggccCAGCGAGg -3'
miRNA:   3'- -AGCGCG--CGAGAG-----GCGUGA------------GUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 33123 0.7 0.602962
Target:  5'- cUCGCGCucaCUCcccgCCGCACggCGGCGGGg -3'
miRNA:   3'- -AGCGCGc--GAGa---GGCGUGa-GUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 49737 0.7 0.602962
Target:  5'- cUCGCGCGgUacagCCGCGucUUCGGCGAGa -3'
miRNA:   3'- -AGCGCGCgAga--GGCGU--GAGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 51823 0.7 0.602962
Target:  5'- gUCGcCGCGCUgUCCgacgacgagGCGCUCGGCGc-- -3'
miRNA:   3'- -AGC-GCGCGAgAGG---------CGUGAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 75718 0.69 0.613205
Target:  5'- cUCGCGCag-CUCCGCGagCAGCGAGa -3'
miRNA:   3'- -AGCGCGcgaGAGGCGUgaGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 132079 0.69 0.623461
Target:  5'- -aGCGCGCUggUCGUGCuggUCAGCAAGg -3'
miRNA:   3'- agCGCGCGAgaGGCGUG---AGUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 55150 0.69 0.640909
Target:  5'- cCGCGCGCUCggUcaucgggcccgacuCCGCGCUCucgguguGCGAGg -3'
miRNA:   3'- aGCGCGCGAG--A--------------GGCGUGAGu------CGUUCa -5'
25256 5' -57.6 NC_005336.1 + 136249 0.7 0.56228
Target:  5'- cUCGCGCugguggcgGCgggCUUCGCGCUCGGCGc-- -3'
miRNA:   3'- -AGCGCG--------CGa--GAGGCGUGAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 67657 0.71 0.542206
Target:  5'- cCGCGCGCaacaccagcgUCUCCGCGggCGGCAGc- -3'
miRNA:   3'- aGCGCGCG----------AGAGGCGUgaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 36249 0.71 0.542206
Target:  5'- aCGCGCgGCggaggCCGCGCUCGGCGc-- -3'
miRNA:   3'- aGCGCG-CGaga--GGCGUGAGUCGUuca -5'
25256 5' -57.6 NC_005336.1 + 77024 0.78 0.204604
Target:  5'- cCGCGCGa--UCCGCGCUCAuGCAGGUu -3'
miRNA:   3'- aGCGCGCgagAGGCGUGAGU-CGUUCA- -5'
25256 5' -57.6 NC_005336.1 + 70153 0.72 0.446285
Target:  5'- aCGCGaCGCgCUgCGCGCUguGCAAGa -3'
miRNA:   3'- aGCGC-GCGaGAgGCGUGAguCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 70863 0.72 0.474136
Target:  5'- -aGCGUcuGCUCaugUCCGCGCUCGGCGGa- -3'
miRNA:   3'- agCGCG--CGAG---AGGCGUGAGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 3824 0.72 0.483612
Target:  5'- cCGCGCGCgcccgCCGCGCgCAGCAGc- -3'
miRNA:   3'- aGCGCGCGaga--GGCGUGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 19755 0.72 0.493178
Target:  5'- aCGCGCGCUCggugCCGCcCgCGGCGAc- -3'
miRNA:   3'- aGCGCGCGAGa---GGCGuGaGUCGUUca -5'
25256 5' -57.6 NC_005336.1 + 88526 0.71 0.512565
Target:  5'- uUCGCGCGCaacaagCgcauguacCCGCACcgCAGCAAGg -3'
miRNA:   3'- -AGCGCGCGa-----Ga-------GGCGUGa-GUCGUUCa -5'
25256 5' -57.6 NC_005336.1 + 133958 0.71 0.512565
Target:  5'- cUCGCGCGCUUcCUGCGC-CGGCuGGc -3'
miRNA:   3'- -AGCGCGCGAGaGGCGUGaGUCGuUCa -5'
25256 5' -57.6 NC_005336.1 + 99791 0.71 0.522375
Target:  5'- uUCGgGCGCgCUUCGCcgUCAGCGAGg -3'
miRNA:   3'- -AGCgCGCGaGAGGCGugAGUCGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.