miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25259 5' -60.4 NC_005336.1 + 86334 0.66 0.742494
Target:  5'- cAUGaa-GCGGuCGggCGCGUCCGUGaCCa -3'
miRNA:   3'- -UGCgacCGCC-GCaaGUGCAGGCGC-GG- -5'
25259 5' -60.4 NC_005336.1 + 97162 0.66 0.742494
Target:  5'- cUGCUGGCcGCGgg-----CCGCGCCg -3'
miRNA:   3'- uGCGACCGcCGCaagugcaGGCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 62719 0.66 0.742494
Target:  5'- gACGCcgugGaGCGGCGcacgcggCGCGUgCUGCGCa -3'
miRNA:   3'- -UGCGa---C-CGCCGCaa-----GUGCA-GGCGCGg -5'
25259 5' -60.4 NC_005336.1 + 43887 0.66 0.742494
Target:  5'- -gGCUcGGCGGCauaugcgugaguGUgagUCGCugcgCCGCGCCa -3'
miRNA:   3'- ugCGA-CCGCCG------------CA---AGUGca--GGCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 118042 0.66 0.742494
Target:  5'- cGCGCU-GUGGCG--CACGggccCCGCgGCCu -3'
miRNA:   3'- -UGCGAcCGCCGCaaGUGCa---GGCG-CGG- -5'
25259 5' -60.4 NC_005336.1 + 75954 0.66 0.742494
Target:  5'- gGCGUUgcGGaCGGcCGUgCGCcgcuccacguGUCCGCGCCc -3'
miRNA:   3'- -UGCGA--CC-GCC-GCAaGUG----------CAGGCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 68212 0.66 0.742494
Target:  5'- gACGCUGcgcGCGGaggaGgccucgCGCGUgCCGCuGCCg -3'
miRNA:   3'- -UGCGAC---CGCCg---Caa----GUGCA-GGCG-CGG- -5'
25259 5' -60.4 NC_005336.1 + 8285 0.66 0.742494
Target:  5'- gACGCUcGCGcGCGggCGCGUggaCUGUGCg -3'
miRNA:   3'- -UGCGAcCGC-CGCaaGUGCA---GGCGCGg -5'
25259 5' -60.4 NC_005336.1 + 65432 0.66 0.742494
Target:  5'- -aGCUGGUGaaccGCGUgCGCGUgCGCuCCa -3'
miRNA:   3'- ugCGACCGC----CGCAaGUGCAgGCGcGG- -5'
25259 5' -60.4 NC_005336.1 + 113459 0.66 0.742494
Target:  5'- cGCGCgccCGGCGacCGCGUCaCGCugGCCu -3'
miRNA:   3'- -UGCGaccGCCGCaaGUGCAG-GCG--CGG- -5'
25259 5' -60.4 NC_005336.1 + 46830 0.66 0.742494
Target:  5'- -aGCgUGGCGuaGUUCACGaugaccaCGCGCUu -3'
miRNA:   3'- ugCG-ACCGCcgCAAGUGCag-----GCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 64943 0.66 0.738719
Target:  5'- aGCGCaGGCGcgccGCGcagCGCGcgaacgccgccagCCGCGCCa -3'
miRNA:   3'- -UGCGaCCGC----CGCaa-GUGCa------------GGCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 3498 0.66 0.733029
Target:  5'- cGCGaaGGCGGcCGgcaGCGgCgGCGCCg -3'
miRNA:   3'- -UGCgaCCGCC-GCaagUGCaGgCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 130342 0.66 0.733029
Target:  5'- gGCGUacgUGGUGGCGcgCGCG-CCGaGCg -3'
miRNA:   3'- -UGCG---ACCGCCGCaaGUGCaGGCgCGg -5'
25259 5' -60.4 NC_005336.1 + 122266 0.66 0.733029
Target:  5'- uCGCUGcaucauggagcGCGGCaccauGUUCAUggucaaGUCCGCGCa -3'
miRNA:   3'- uGCGAC-----------CGCCG-----CAAGUG------CAGGCGCGg -5'
25259 5' -60.4 NC_005336.1 + 127643 0.66 0.733029
Target:  5'- gACGCUGGUGGCcg-C-CGgCUGCGaCCc -3'
miRNA:   3'- -UGCGACCGCCGcaaGuGCaGGCGC-GG- -5'
25259 5' -60.4 NC_005336.1 + 97366 0.66 0.733029
Target:  5'- cUGCUGcGCucgGGCGagCuCGaCCGCGCCa -3'
miRNA:   3'- uGCGAC-CG---CCGCaaGuGCaGGCGCGG- -5'
25259 5' -60.4 NC_005336.1 + 21091 0.66 0.733029
Target:  5'- cCGCgGGCcGCGggcgCGCGcCCGCGgCa -3'
miRNA:   3'- uGCGaCCGcCGCaa--GUGCaGGCGCgG- -5'
25259 5' -60.4 NC_005336.1 + 110674 0.66 0.733029
Target:  5'- uCGCUGuCGGCGUcgccccugUCGCuUUCGCuGCCg -3'
miRNA:   3'- uGCGACcGCCGCA--------AGUGcAGGCG-CGG- -5'
25259 5' -60.4 NC_005336.1 + 67527 0.66 0.733029
Target:  5'- aGCGgUaGGCagaaccagGGCGUcgauucCGCGcCCGCGCCg -3'
miRNA:   3'- -UGCgA-CCG--------CCGCAa-----GUGCaGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.