miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25261 3' -55.9 NC_005336.1 + 56143 0.66 0.904924
Target:  5'- cGGGAAGCugGUG-CCGauggCGCCCGCGg -3'
miRNA:   3'- -CUCUUCG--UACuGGUgga-GCGGGUGCg -5'
25261 3' -55.9 NC_005336.1 + 46832 0.66 0.904924
Target:  5'- -cGuGGCGuaguucacgaUGACCACgcgcuuguucagCUCGCUCGCGCg -3'
miRNA:   3'- cuCuUCGU----------ACUGGUG------------GAGCGGGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 128219 0.66 0.904924
Target:  5'- cGGGAacuGGUAcgugGGCagCGCCUCGCUCACGg -3'
miRNA:   3'- -CUCU---UCGUa---CUG--GUGGAGCGGGUGCg -5'
25261 3' -55.9 NC_005336.1 + 90308 0.66 0.904924
Target:  5'- --cGGGCAUGA--ACC-CGUCCACGCc -3'
miRNA:   3'- cucUUCGUACUggUGGaGCGGGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 139343 0.66 0.904924
Target:  5'- cGGAcGCGcGGCCGCC-CGCggCACGCg -3'
miRNA:   3'- cUCUuCGUaCUGGUGGaGCGg-GUGCG- -5'
25261 3' -55.9 NC_005336.1 + 139343 0.66 0.904924
Target:  5'- cGGAcGCGcGGCCGCC-CGCggCACGCg -3'
miRNA:   3'- cUCUuCGUaCUGGUGGaGCGg-GUGCG- -5'
25261 3' -55.9 NC_005336.1 + 117231 0.66 0.904924
Target:  5'- -cGGAGCAUGGCggcgACCaCGUCCuCGCg -3'
miRNA:   3'- cuCUUCGUACUGg---UGGaGCGGGuGCG- -5'
25261 3' -55.9 NC_005336.1 + 61293 0.66 0.904924
Target:  5'- ----cGCGUGACCACCgCGCaCauggagGCGCa -3'
miRNA:   3'- cucuuCGUACUGGUGGaGCG-Gg-----UGCG- -5'
25261 3' -55.9 NC_005336.1 + 100754 0.66 0.904924
Target:  5'- ----uGCGcGACCGcauCCUCGCggCCACGCg -3'
miRNA:   3'- cucuuCGUaCUGGU---GGAGCG--GGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 84637 0.66 0.900468
Target:  5'- cGAGAGcGCGgagucgggcccgaUGACCGagcgcgcggucugguCCUUGCgCCGCGCu -3'
miRNA:   3'- -CUCUU-CGU-------------ACUGGU---------------GGAGCG-GGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 72563 0.66 0.898523
Target:  5'- cGAGGGcGCGUaGACCAUgacuuggucaUCGgCCACGCg -3'
miRNA:   3'- -CUCUU-CGUA-CUGGUGg---------AGCgGGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 50250 0.66 0.898523
Target:  5'- cGGGAGGCGa-GCUGCgCUCGaCCCGgGCa -3'
miRNA:   3'- -CUCUUCGUacUGGUG-GAGC-GGGUgCG- -5'
25261 3' -55.9 NC_005336.1 + 99917 0.66 0.898523
Target:  5'- -uGGAGCGcGACCGCg-CGCUgAUGCg -3'
miRNA:   3'- cuCUUCGUaCUGGUGgaGCGGgUGCG- -5'
25261 3' -55.9 NC_005336.1 + 62992 0.66 0.898523
Target:  5'- aAGGAGCGccGACC-CgUCGCCaugaccaGCGCg -3'
miRNA:   3'- cUCUUCGUa-CUGGuGgAGCGGg------UGCG- -5'
25261 3' -55.9 NC_005336.1 + 28587 0.66 0.898523
Target:  5'- aAGAAGac-GGCCGCgagcagguaCUCGgCCACGCa -3'
miRNA:   3'- cUCUUCguaCUGGUG---------GAGCgGGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 26334 0.66 0.898523
Target:  5'- aAGGccAGCGUGACgcgguCGCCgggCGCgCGCGCc -3'
miRNA:   3'- cUCU--UCGUACUG-----GUGGa--GCGgGUGCG- -5'
25261 3' -55.9 NC_005336.1 + 57225 0.66 0.898523
Target:  5'- cGAGAuaguGGCGcUGACCGCgUCGa--GCGCg -3'
miRNA:   3'- -CUCU----UCGU-ACUGGUGgAGCgggUGCG- -5'
25261 3' -55.9 NC_005336.1 + 120022 0.66 0.898523
Target:  5'- aGAGAuuuGUcgGcGCCGCCgUCGCCgCGgGCg -3'
miRNA:   3'- -CUCUu--CGuaC-UGGUGG-AGCGG-GUgCG- -5'
25261 3' -55.9 NC_005336.1 + 679 0.66 0.898523
Target:  5'- gGAGAGGCGgagaGCUgACC-CGCCCuccGCGCu -3'
miRNA:   3'- -CUCUUCGUac--UGG-UGGaGCGGG---UGCG- -5'
25261 3' -55.9 NC_005336.1 + 76749 0.66 0.898523
Target:  5'- gGAG-GGCAUGugCGCggugCGCCgcaGCGCg -3'
miRNA:   3'- -CUCuUCGUACugGUGga--GCGGg--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.