miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25262 5' -61.8 NC_005336.1 + 22636 0.66 0.649531
Target:  5'- cGCCGCGcGCAagaacccagccuGCGUUcCCGGCGUcGUgCGc -3'
miRNA:   3'- -CGGCGU-CGU------------CGCGA-GGCCGCA-CAgGU- -5'
25262 5' -61.8 NC_005336.1 + 9136 0.66 0.649531
Target:  5'- aCCGCAGCAcGCGCUCCaGCa------ -3'
miRNA:   3'- cGGCGUCGU-CGCGAGGcCGcacaggu -5'
25262 5' -61.8 NC_005336.1 + 95655 0.66 0.649531
Target:  5'- gGCCGcCGGCAGCGCgUCGGC----CCAc -3'
miRNA:   3'- -CGGC-GUCGUCGCGaGGCCGcacaGGU- -5'
25262 5' -61.8 NC_005336.1 + 9233 0.66 0.649531
Target:  5'- aGCCGCAGC-GCGgUCU--CGaUGUCCAc -3'
miRNA:   3'- -CGGCGUCGuCGCgAGGccGC-ACAGGU- -5'
25262 5' -61.8 NC_005336.1 + 97661 0.66 0.649531
Target:  5'- gGCCGCGcgccGCGGCGCcUCGGgGUcGcCCGu -3'
miRNA:   3'- -CGGCGU----CGUCGCGaGGCCgCA-CaGGU- -5'
25262 5' -61.8 NC_005336.1 + 58168 0.66 0.649531
Target:  5'- aGgCGCAGCAGCGCUCUacuuugcgacCGUGUUg- -3'
miRNA:   3'- -CgGCGUCGUCGCGAGGcc--------GCACAGgu -5'
25262 5' -61.8 NC_005336.1 + 24311 0.66 0.649531
Target:  5'- uGUCGgcgacCAGCGGCGUcugcuUCCGGCG-GUaCCGa -3'
miRNA:   3'- -CGGC-----GUCGUCGCG-----AGGCCGCaCA-GGU- -5'
25262 5' -61.8 NC_005336.1 + 9918 0.66 0.649531
Target:  5'- uGgUGCAGCAGCGagUCCaGGCGacUGUCg- -3'
miRNA:   3'- -CgGCGUCGUCGCg-AGG-CCGC--ACAGgu -5'
25262 5' -61.8 NC_005336.1 + 98465 0.66 0.646552
Target:  5'- -aCGCGGCGGCGUcugcgcuuuuuguuUCCGGCGgcgaCAu -3'
miRNA:   3'- cgGCGUCGUCGCG--------------AGGCCGCacagGU- -5'
25262 5' -61.8 NC_005336.1 + 124131 0.66 0.646552
Target:  5'- cGCCGCGgcugacgcgaucgcGCAGCGagcagCCGcggccGCGUGUCUg -3'
miRNA:   3'- -CGGCGU--------------CGUCGCga---GGC-----CGCACAGGu -5'
25262 5' -61.8 NC_005336.1 + 123162 0.66 0.639596
Target:  5'- cGCCGCuGCAcGUGUaCCuGCG-GUCCGg -3'
miRNA:   3'- -CGGCGuCGU-CGCGaGGcCGCaCAGGU- -5'
25262 5' -61.8 NC_005336.1 + 65637 0.66 0.639596
Target:  5'- cGCCGUGGCgaaGGCGCUCUucauGGCGc--CCAc -3'
miRNA:   3'- -CGGCGUCG---UCGCGAGG----CCGCacaGGU- -5'
25262 5' -61.8 NC_005336.1 + 41565 0.66 0.639596
Target:  5'- cGCCgGCGGCggAGCGCUCgCGGaCGaagcccagcccGUCCAc -3'
miRNA:   3'- -CGG-CGUCG--UCGCGAG-GCC-GCa----------CAGGU- -5'
25262 5' -61.8 NC_005336.1 + 21385 0.66 0.639596
Target:  5'- cGCCGCAGCucuuugugcgGGCGCUCUcGCGgcacUUCGa -3'
miRNA:   3'- -CGGCGUCG----------UCGCGAGGcCGCac--AGGU- -5'
25262 5' -61.8 NC_005336.1 + 8437 0.66 0.639596
Target:  5'- cGCUGCGGCagauucgugcgGGCGC-CCGGUGgaacGUCg- -3'
miRNA:   3'- -CGGCGUCG-----------UCGCGaGGCCGCa---CAGgu -5'
25262 5' -61.8 NC_005336.1 + 99343 0.66 0.639596
Target:  5'- cGCUGCGuGCGcCGcCUCCGGCGUG-Cg- -3'
miRNA:   3'- -CGGCGU-CGUcGC-GAGGCCGCACaGgu -5'
25262 5' -61.8 NC_005336.1 + 40742 0.66 0.639596
Target:  5'- -aCGCAGUcGCGCUCCgagauGGCGUG-Ca- -3'
miRNA:   3'- cgGCGUCGuCGCGAGG-----CCGCACaGgu -5'
25262 5' -61.8 NC_005336.1 + 36036 0.66 0.639596
Target:  5'- cCCGCAGU-GCGCgUCCuGCGUGcgCCc -3'
miRNA:   3'- cGGCGUCGuCGCG-AGGcCGCACa-GGu -5'
25262 5' -61.8 NC_005336.1 + 131337 0.66 0.639596
Target:  5'- cGCUGCuuCGGCGCggcgCCaGCGUGaCCGc -3'
miRNA:   3'- -CGGCGucGUCGCGa---GGcCGCACaGGU- -5'
25262 5' -61.8 NC_005336.1 + 16646 0.66 0.638602
Target:  5'- cGCCGCccuccGGCGGCaggaaggcgcaggGCagCGGCGUgcGUCCGu -3'
miRNA:   3'- -CGGCG-----UCGUCG-------------CGagGCCGCA--CAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.