miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25263 3' -56.2 NC_005336.1 + 128116 0.66 0.900631
Target:  5'- aCGCGGacgaGCUGCGCGCggcgggCGU-CAACu -3'
miRNA:   3'- -GCGCCaag-UGGCGCGUGa-----GCAcGUUG- -5'
25263 3' -56.2 NC_005336.1 + 21919 0.66 0.900631
Target:  5'- gGCuGcUCuCCGgGCAC-CGUGCAGCc -3'
miRNA:   3'- gCGcCaAGuGGCgCGUGaGCACGUUG- -5'
25263 3' -56.2 NC_005336.1 + 130623 0.66 0.900631
Target:  5'- aGCGcGcgCugCGCGCGCU-GcGCGACu -3'
miRNA:   3'- gCGC-CaaGugGCGCGUGAgCaCGUUG- -5'
25263 3' -56.2 NC_005336.1 + 124028 0.66 0.900631
Target:  5'- uGCGcaagCACaCGCGCGC-CGUGCGc- -3'
miRNA:   3'- gCGCcaa-GUG-GCGCGUGaGCACGUug -5'
25263 3' -56.2 NC_005336.1 + 33884 0.66 0.900631
Target:  5'- uCGCGGUaggCGCCGagcgcgaacuccUGCACaaagggcgCGUGUAGCa -3'
miRNA:   3'- -GCGCCAa--GUGGC------------GCGUGa-------GCACGUUG- -5'
25263 3' -56.2 NC_005336.1 + 94943 0.66 0.900631
Target:  5'- aCGCGGa-CGCCcgcggGCGCGC-CGgcgGCGACu -3'
miRNA:   3'- -GCGCCaaGUGG-----CGCGUGaGCa--CGUUG- -5'
25263 3' -56.2 NC_005336.1 + 91234 0.66 0.898698
Target:  5'- gGCGGUguUCACCGUggucuggauguugaGCGCggcCGUgaGCAGCc -3'
miRNA:   3'- gCGCCA--AGUGGCG--------------CGUGa--GCA--CGUUG- -5'
25263 3' -56.2 NC_005336.1 + 46271 0.66 0.894108
Target:  5'- gGCGGUacuggCACUG-GCACUgGUaggaGCAGCa -3'
miRNA:   3'- gCGCCAa----GUGGCgCGUGAgCA----CGUUG- -5'
25263 3' -56.2 NC_005336.1 + 74107 0.66 0.894108
Target:  5'- aGCGuGcgCACCG-GCAuCUCGgccgGCGGCa -3'
miRNA:   3'- gCGC-CaaGUGGCgCGU-GAGCa---CGUUG- -5'
25263 3' -56.2 NC_005336.1 + 28442 0.66 0.894108
Target:  5'- uCGC---UCuuCCGCaCGCUCGUGCGGCg -3'
miRNA:   3'- -GCGccaAGu-GGCGcGUGAGCACGUUG- -5'
25263 3' -56.2 NC_005336.1 + 93384 0.66 0.894108
Target:  5'- gCGCGG--CGCCGCGCGC-CgGUGgaAGCg -3'
miRNA:   3'- -GCGCCaaGUGGCGCGUGaG-CACg-UUG- -5'
25263 3' -56.2 NC_005336.1 + 54185 0.66 0.894108
Target:  5'- gCGCGGUcggcggCGCCGCGCGa-CG-GCGGa -3'
miRNA:   3'- -GCGCCAa-----GUGGCGCGUgaGCaCGUUg -5'
25263 3' -56.2 NC_005336.1 + 96965 0.66 0.894108
Target:  5'- uCGCGGggu-CCGCGUuccGCuUCGUGCuGCc -3'
miRNA:   3'- -GCGCCaaguGGCGCG---UG-AGCACGuUG- -5'
25263 3' -56.2 NC_005336.1 + 133803 0.66 0.894108
Target:  5'- gCGCGuGUccUCGCCGCaccccaucgaGCAcCUCGcGCGGCu -3'
miRNA:   3'- -GCGC-CA--AGUGGCG----------CGU-GAGCaCGUUG- -5'
25263 3' -56.2 NC_005336.1 + 63758 0.66 0.894108
Target:  5'- cCGCGGccUUCG-CGCGCAagcgCGUGCGc- -3'
miRNA:   3'- -GCGCC--AAGUgGCGCGUga--GCACGUug -5'
25263 3' -56.2 NC_005336.1 + 53027 0.66 0.893443
Target:  5'- aCGUGGUgCACUGCugcgaagGCGCgaUCGUGCGucuGCg -3'
miRNA:   3'- -GCGCCAaGUGGCG-------CGUG--AGCACGU---UG- -5'
25263 3' -56.2 NC_005336.1 + 10467 0.66 0.892776
Target:  5'- nCGCGGUcuucccgaacUCGCCaGCGUACUCcacagaggcgccUGCGGCc -3'
miRNA:   3'- -GCGCCA----------AGUGG-CGCGUGAGc-----------ACGUUG- -5'
25263 3' -56.2 NC_005336.1 + 59248 0.66 0.887355
Target:  5'- gCGCGcUUCGCgGCGUGCUCGcuCGACc -3'
miRNA:   3'- -GCGCcAAGUGgCGCGUGAGCacGUUG- -5'
25263 3' -56.2 NC_005336.1 + 35912 0.66 0.887355
Target:  5'- cCGCGGU--GCCGCGUGa-CGUGCuuCu -3'
miRNA:   3'- -GCGCCAagUGGCGCGUgaGCACGuuG- -5'
25263 3' -56.2 NC_005336.1 + 14959 0.66 0.887355
Target:  5'- uCGCGGagu-CCG-GUACcCGUGCAGCg -3'
miRNA:   3'- -GCGCCaaguGGCgCGUGaGCACGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.