miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25264 5' -53.2 NC_005336.1 + 134169 0.66 0.969541
Target:  5'- ----gCACGGAAACCCUUcggguuguccGCCUCa-- -3'
miRNA:   3'- agcaaGUGCCUUUGGGGA----------CGGAGauc -5'
25264 5' -53.2 NC_005336.1 + 52566 0.66 0.966406
Target:  5'- aUCG---ACGGGcgcaagcacGACCCCUGUCUCUcGGg -3'
miRNA:   3'- -AGCaagUGCCU---------UUGGGGACGGAGA-UC- -5'
25264 5' -53.2 NC_005336.1 + 116219 0.66 0.966406
Target:  5'- uUCGUggUCGCGGaAAGCCCCgGCacgUAGa -3'
miRNA:   3'- -AGCA--AGUGCC-UUUGGGGaCGgagAUC- -5'
25264 5' -53.2 NC_005336.1 + 122773 0.66 0.963049
Target:  5'- cUGUUCGCGGGAugCC-UGCgCUCc-- -3'
miRNA:   3'- aGCAAGUGCCUUugGGgACG-GAGauc -5'
25264 5' -53.2 NC_005336.1 + 131982 0.66 0.963049
Target:  5'- gUCGUUgCGCGGAcgacGACCCUUGUC-Cg-- -3'
miRNA:   3'- -AGCAA-GUGCCU----UUGGGGACGGaGauc -5'
25264 5' -53.2 NC_005336.1 + 125453 0.66 0.959466
Target:  5'- cUGcUCGCGGAGAuCCgCCUGgCCUCg-- -3'
miRNA:   3'- aGCaAGUGCCUUU-GG-GGAC-GGAGauc -5'
25264 5' -53.2 NC_005336.1 + 72260 0.66 0.95565
Target:  5'- gCGggCGCGGAaucGACgCCCUGgUUCUGc -3'
miRNA:   3'- aGCaaGUGCCU---UUG-GGGACgGAGAUc -5'
25264 5' -53.2 NC_005336.1 + 125443 0.67 0.951598
Target:  5'- cUCG-UCGCGGAccgcugcuACUCCUGCCUg--- -3'
miRNA:   3'- -AGCaAGUGCCUu-------UGGGGACGGAgauc -5'
25264 5' -53.2 NC_005336.1 + 105204 0.67 0.942767
Target:  5'- -aGUUCGa-GAagcagGACCCCUGCUUCUAc -3'
miRNA:   3'- agCAAGUgcCU-----UUGGGGACGGAGAUc -5'
25264 5' -53.2 NC_005336.1 + 135758 0.68 0.927668
Target:  5'- cCGcgCGCGGc-GCCCCUcGCCggugCUAGu -3'
miRNA:   3'- aGCaaGUGCCuuUGGGGA-CGGa---GAUC- -5'
25264 5' -53.2 NC_005336.1 + 64892 0.68 0.897517
Target:  5'- cUCGUgUACGuGGuggaCCCUGCCUCUAu -3'
miRNA:   3'- -AGCAaGUGC-CUuug-GGGACGGAGAUc -5'
25264 5' -53.2 NC_005336.1 + 12044 0.68 0.897517
Target:  5'- gCGUUCACGGAcACgCCCgcgGCCa---- -3'
miRNA:   3'- aGCAAGUGCCUuUG-GGGa--CGGagauc -5'
25264 5' -53.2 NC_005336.1 + 74067 0.69 0.890751
Target:  5'- gUCGaggucuagCGCGGGGAUCuCCUGCUUCUGc -3'
miRNA:   3'- -AGCaa------GUGCCUUUGG-GGACGGAGAUc -5'
25264 5' -53.2 NC_005336.1 + 110936 0.69 0.890751
Target:  5'- gCGaugCACGGcgugguGGACCCCUGCUUCg-- -3'
miRNA:   3'- aGCaa-GUGCC------UUUGGGGACGGAGauc -5'
25264 5' -53.2 NC_005336.1 + 58016 0.82 0.254291
Target:  5'- cUGUUCACGGAcgcaGGCCCCUGgCUCUAc -3'
miRNA:   3'- aGCAAGUGCCU----UUGGGGACgGAGAUc -5'
25264 5' -53.2 NC_005336.1 + 8141 1.09 0.005288
Target:  5'- cUCGUUCACGGAAACCCCUGCCUCUAGc -3'
miRNA:   3'- -AGCAAGUGCCUUUGGGGACGGAGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.