miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25265 5' -58.1 NC_005336.1 + 3347 0.66 0.82005
Target:  5'- aGGAGAAGCucGCGuGCAuGCCcucgcccugcggguaCGCCGGCg -3'
miRNA:   3'- gCUUCUUCG--CGU-CGU-CGGc--------------GUGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 3347 0.66 0.82005
Target:  5'- aGGAGAAGCucGCGuGCAuGCCcucgcccugcggguaCGCCGGCg -3'
miRNA:   3'- gCUUCUUCG--CGU-CGU-CGGc--------------GUGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 29127 0.66 0.819196
Target:  5'- -----uGGCgGCGGUGGCCGCGCUcgagGGCu -3'
miRNA:   3'- gcuucuUCG-CGUCGUCGGCGUGG----CCG- -5'
25265 5' -58.1 NC_005336.1 + 75747 0.66 0.819196
Target:  5'- cCGcGGAGGUcauGCGGUcGCCGCugACgGGCg -3'
miRNA:   3'- -GCuUCUUCG---CGUCGuCGGCG--UGgCCG- -5'
25265 5' -58.1 NC_005336.1 + 67537 0.66 0.819196
Target:  5'- aGAAccaGGGCGUcgauuccGCGcCCGCGCCGGCg -3'
miRNA:   3'- gCUUc--UUCGCGu------CGUcGGCGUGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 97349 0.66 0.819196
Target:  5'- gCGAc--GGCGCGGCcucgcuGCUGCGCUcgGGCg -3'
miRNA:   3'- -GCUucuUCGCGUCGu-----CGGCGUGG--CCG- -5'
25265 5' -58.1 NC_005336.1 + 120164 0.66 0.819196
Target:  5'- cCGggGAGGCa-AGCAGuuGgAUaCGGCg -3'
miRNA:   3'- -GCuuCUUCGcgUCGUCggCgUG-GCCG- -5'
25265 5' -58.1 NC_005336.1 + 76117 0.66 0.819196
Target:  5'- gCGAGGAcAGCGUAcGCGggguuGUCGUcggggACCGGCu -3'
miRNA:   3'- -GCUUCU-UCGCGU-CGU-----CGGCG-----UGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 92182 0.66 0.819196
Target:  5'- uCGucGAAGCGCGuGgGGUCGCaggugugcaGCgCGGCg -3'
miRNA:   3'- -GCuuCUUCGCGU-CgUCGGCG---------UG-GCCG- -5'
25265 5' -58.1 NC_005336.1 + 130909 0.66 0.819196
Target:  5'- ---cGAGcGCGCGGCccGCUGC-CUGGCg -3'
miRNA:   3'- gcuuCUU-CGCGUCGu-CGGCGuGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 53787 0.66 0.819196
Target:  5'- gCGAGGccgccgccaccAAGCaaaGCGGCAGCCacgcGCGCgGGUc -3'
miRNA:   3'- -GCUUC-----------UUCG---CGUCGUCGG----CGUGgCCG- -5'
25265 5' -58.1 NC_005336.1 + 14673 0.66 0.819196
Target:  5'- gCGGAGcuuGGUcaGCAGCcGCCGCAgUCGGg -3'
miRNA:   3'- -GCUUCu--UCG--CGUCGuCGGCGU-GGCCg -5'
25265 5' -58.1 NC_005336.1 + 43439 0.66 0.819196
Target:  5'- gCGGAGGcAGaCGCGGCGGCagaggcggucgGCGCCcGCg -3'
miRNA:   3'- -GCUUCU-UC-GCGUCGUCGg----------CGUGGcCG- -5'
25265 5' -58.1 NC_005336.1 + 69363 0.66 0.819196
Target:  5'- ----cAAGCGCcugGGCGuGCCGUcuuccuGCCGGCg -3'
miRNA:   3'- gcuucUUCGCG---UCGU-CGGCG------UGGCCG- -5'
25265 5' -58.1 NC_005336.1 + 68438 0.66 0.819196
Target:  5'- ----cGGGCGCGGCuAGUgGCGCCgccgGGCg -3'
miRNA:   3'- gcuucUUCGCGUCG-UCGgCGUGG----CCG- -5'
25265 5' -58.1 NC_005336.1 + 16305 0.66 0.819196
Target:  5'- uCGAAGcccGCGCAGU-GCacguGCAgCGGCg -3'
miRNA:   3'- -GCUUCuu-CGCGUCGuCGg---CGUgGCCG- -5'
25265 5' -58.1 NC_005336.1 + 125912 0.66 0.819196
Target:  5'- -cAAGAcgcucuacGGCGCGGUGGUCGCggcgccGCCGuGCg -3'
miRNA:   3'- gcUUCU--------UCGCGUCGUCGGCG------UGGC-CG- -5'
25265 5' -58.1 NC_005336.1 + 100666 0.66 0.819196
Target:  5'- gCGAAG-AGCGC-GCA-CUGCGCCaccguGGCu -3'
miRNA:   3'- -GCUUCuUCGCGuCGUcGGCGUGG-----CCG- -5'
25265 5' -58.1 NC_005336.1 + 87806 0.66 0.819196
Target:  5'- uCGAAGAGcuGCGC--CAGCUGCGCaGGUc -3'
miRNA:   3'- -GCUUCUU--CGCGucGUCGGCGUGgCCG- -5'
25265 5' -58.1 NC_005336.1 + 88731 0.66 0.819196
Target:  5'- ---cGggGCGCGGCuuCCGCAUgaCGGa -3'
miRNA:   3'- gcuuCuuCGCGUCGucGGCGUG--GCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.