miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25268 3' -53.1 NC_005336.1 + 75138 0.66 0.968105
Target:  5'- -gCGCUCGUCGAgCgccgggaagCGgCGCUCGggCg -3'
miRNA:   3'- aaGCGAGCAGCU-Ga--------GCaGUGAGCaaG- -5'
25268 3' -53.1 NC_005336.1 + 126611 0.66 0.968105
Target:  5'- --aGCUCGUCGACUUcaugCGgCUCGUg- -3'
miRNA:   3'- aagCGAGCAGCUGAGca--GU-GAGCAag -5'
25268 3' -53.1 NC_005336.1 + 85862 0.66 0.96486
Target:  5'- aUCGCUCGggGACgugcgCGUCGCggacgCGgUCg -3'
miRNA:   3'- aAGCGAGCagCUGa----GCAGUGa----GCaAG- -5'
25268 3' -53.1 NC_005336.1 + 90334 0.66 0.96139
Target:  5'- --aGCUCGUCGAC-CGU-GCUCGc-- -3'
miRNA:   3'- aagCGAGCAGCUGaGCAgUGAGCaag -5'
25268 3' -53.1 NC_005336.1 + 114000 0.66 0.96139
Target:  5'- -gCGCUCGcCGgaGCUCGUCGC-CGa-- -3'
miRNA:   3'- aaGCGAGCaGC--UGAGCAGUGaGCaag -5'
25268 3' -53.1 NC_005336.1 + 71040 0.68 0.924998
Target:  5'- -gCGCUCGggcUCGggGCUCGUCGCgUCGcgCa -3'
miRNA:   3'- aaGCGAGC---AGC--UGAGCAGUG-AGCaaG- -5'
25268 3' -53.1 NC_005336.1 + 1784 0.68 0.91933
Target:  5'- --aGCgagUGUCGACUCGUUAUcgUGUUCu -3'
miRNA:   3'- aagCGa--GCAGCUGAGCAGUGa-GCAAG- -5'
25268 3' -53.1 NC_005336.1 + 1784 0.68 0.91933
Target:  5'- --aGCgagUGUCGACUCGUUAUcgUGUUCu -3'
miRNA:   3'- aagCGa--GCAGCUGAGCAGUGa-GCAAG- -5'
25268 3' -53.1 NC_005336.1 + 121957 0.7 0.857352
Target:  5'- -gUGCUCGUgCGGCagaUCGUCAacgCGUUCa -3'
miRNA:   3'- aaGCGAGCA-GCUG---AGCAGUga-GCAAG- -5'
25268 3' -53.1 NC_005336.1 + 51124 0.72 0.758983
Target:  5'- cUCGCUCG-CG-CUgGUCACUCGg-- -3'
miRNA:   3'- aAGCGAGCaGCuGAgCAGUGAGCaag -5'
25268 3' -53.1 NC_005336.1 + 2109 1.07 0.00646
Target:  5'- gUUCGCUCGUCGACUCGUCACUCGUUCu -3'
miRNA:   3'- -AAGCGAGCAGCUGAGCAGUGAGCAAG- -5'
25268 3' -53.1 NC_005336.1 + 2109 1.07 0.00646
Target:  5'- gUUCGCUCGUCGACUCGUCACUCGUUCu -3'
miRNA:   3'- -AAGCGAGCAGCUGAGCAGUGAGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.