miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25268 5' -56.7 NC_005336.1 + 77965 0.66 0.837781
Target:  5'- cGGGCUGGGgcgaGGGGGUGCGCuucGAGUc -3'
miRNA:   3'- uUCUGGCUCac--UCCUCACGCG---CUCAc -5'
25268 5' -56.7 NC_005336.1 + 1944 0.67 0.784892
Target:  5'- ---uCUGAGUGGGuGAGUGUgaGUGAGUGa -3'
miRNA:   3'- uucuGGCUCACUC-CUCACG--CGCUCAC- -5'
25268 5' -56.7 NC_005336.1 + 1944 0.67 0.784892
Target:  5'- ---uCUGAGUGGGuGAGUGUgaGUGAGUGa -3'
miRNA:   3'- uucuGGCUCACUC-CUCACG--CGCUCAC- -5'
25268 5' -56.7 NC_005336.1 + 64113 0.68 0.765092
Target:  5'- aAGGACCGAGUcgcgcacGAGuuugccGUGCGCGAGg- -3'
miRNA:   3'- -UUCUGGCUCA-------CUCcu----CACGCGCUCac -5'
25268 5' -56.7 NC_005336.1 + 2755 0.68 0.746718
Target:  5'- ---cCCGAGUGAGaGAGUGaGUGAGUu -3'
miRNA:   3'- uucuGGCUCACUC-CUCACgCGCUCAc -5'
25268 5' -56.7 NC_005336.1 + 2662 0.68 0.746718
Target:  5'- ---cCCGAGUGAGuGAGcGaGCGAGUGa -3'
miRNA:   3'- uucuGGCUCACUC-CUCaCgCGCUCAC- -5'
25268 5' -56.7 NC_005336.1 + 2755 0.68 0.746718
Target:  5'- ---cCCGAGUGAGaGAGUGaGUGAGUu -3'
miRNA:   3'- uucuGGCUCACUC-CUCACgCGCUCAc -5'
25268 5' -56.7 NC_005336.1 + 2662 0.68 0.746718
Target:  5'- ---cCCGAGUGAGuGAGcGaGCGAGUGa -3'
miRNA:   3'- uucuGGCUCACUC-CUCaCgCGCUCAC- -5'
25268 5' -56.7 NC_005336.1 + 2705 0.69 0.666057
Target:  5'- -cGAgCGAGUGAGcGAGUGCGCu---- -3'
miRNA:   3'- uuCUgGCUCACUC-CUCACGCGcucac -5'
25268 5' -56.7 NC_005336.1 + 2705 0.69 0.666057
Target:  5'- -cGAgCGAGUGAGcGAGUGCGCu---- -3'
miRNA:   3'- uuCUgGCUCACUC-CUCACGCGcucac -5'
25268 5' -56.7 NC_005336.1 + 2143 1.06 0.002997
Target:  5'- uAAGACCGAGUGAGGAGUGCGCGAGUGg -3'
miRNA:   3'- -UUCUGGCUCACUCCUCACGCGCUCAC- -5'
25268 5' -56.7 NC_005336.1 + 2143 1.06 0.002997
Target:  5'- uAAGACCGAGUGAGGAGUGCGCGAGUGg -3'
miRNA:   3'- -UUCUGGCUCACUCCUCACGCGCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.