Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25269 | 3' | -53.5 | NC_005336.1 | + | 3579 | 0.66 | 0.975793 |
Target: 5'- gCCGAGCagccugcgcagcgagGGGUGcaugguGGUGUUGGCUGUgGu -3' miRNA: 3'- -GGCUCG---------------CUCAC------UCACAGCUGACAgCu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 3579 | 0.66 | 0.975793 |
Target: 5'- gCCGAGCagccugcgcagcgagGGGUGcaugguGGUGUUGGCUGUgGu -3' miRNA: 3'- -GGCUCG---------------CUCAC------UCACAGCUGACAgCu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2871 | 0.66 | 0.972076 |
Target: 5'- uCUGAGCGAGuUGAcUGUUGACUuGUUc- -3' miRNA: 3'- -GGCUCGCUC-ACUcACAGCUGA-CAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2871 | 0.66 | 0.972076 |
Target: 5'- uCUGAGCGAGuUGAcUGUUGACUuGUUc- -3' miRNA: 3'- -GGCUCGCUC-ACUcACAGCUGA-CAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 121345 | 0.66 | 0.972076 |
Target: 5'- gCCGgcGGCGAGgGAGUcGcUUGGCUGUCu- -3' miRNA: 3'- -GGC--UCGCUCaCUCA-C-AGCUGACAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 94440 | 0.66 | 0.96276 |
Target: 5'- aCCGGGCG-GUGAGcucaaUGUCGG-UGUUGu -3' miRNA: 3'- -GGCUCGCuCACUC-----ACAGCUgACAGCu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2147 | 0.67 | 0.959223 |
Target: 5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3' miRNA: 3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2147 | 0.67 | 0.959223 |
Target: 5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3' miRNA: 3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2609 | 0.68 | 0.927984 |
Target: 5'- uCCGGGCGAGUG---GUCGACcGUUa- -3' miRNA: 3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2609 | 0.68 | 0.927984 |
Target: 5'- uCCGGGCGAGUG---GUCGACcGUUa- -3' miRNA: 3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1944 | 0.68 | 0.922566 |
Target: 5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3' miRNA: 3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1944 | 0.68 | 0.922566 |
Target: 5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3' miRNA: 3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1696 | 0.68 | 0.911007 |
Target: 5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3' miRNA: 3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1696 | 0.68 | 0.911007 |
Target: 5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3' miRNA: 3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2822 | 0.7 | 0.870692 |
Target: 5'- uCCGAGCGAGcGAGU--UGcCUGUUGAc -3' miRNA: 3'- -GGCUCGCUCaCUCAcaGCuGACAGCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2822 | 0.7 | 0.870692 |
Target: 5'- uCCGAGCGAGcGAGU--UGcCUGUUGAc -3' miRNA: 3'- -GGCUCGCUCaCUCAcaGCuGACAGCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2675 | 0.71 | 0.787031 |
Target: 5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3' miRNA: 3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 2675 | 0.71 | 0.787031 |
Target: 5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3' miRNA: 3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1769 | 0.77 | 0.47703 |
Target: 5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3' miRNA: 3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5' |
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25269 | 3' | -53.5 | NC_005336.1 | + | 1769 | 0.77 | 0.47703 |
Target: 5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3' miRNA: 3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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