miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25269 3' -53.5 NC_005336.1 + 1696 0.68 0.911007
Target:  5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3'
miRNA:   3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 1696 0.68 0.911007
Target:  5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3'
miRNA:   3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 1769 0.77 0.47703
Target:  5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3'
miRNA:   3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 1769 0.77 0.47703
Target:  5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3'
miRNA:   3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 1824 1.11 0.004472
Target:  5'- uCCGAGCGAGUGAGUGUCGACUGUCGAc -3'
miRNA:   3'- -GGCUCGCUCACUCACAGCUGACAGCU- -5'
25269 3' -53.5 NC_005336.1 + 1824 1.11 0.004472
Target:  5'- uCCGAGCGAGUGAGUGUCGACUGUCGAc -3'
miRNA:   3'- -GGCUCGCUCACUCACAGCUGACAGCU- -5'
25269 3' -53.5 NC_005336.1 + 1944 0.68 0.922566
Target:  5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3'
miRNA:   3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5'
25269 3' -53.5 NC_005336.1 + 1944 0.68 0.922566
Target:  5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3'
miRNA:   3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5'
25269 3' -53.5 NC_005336.1 + 2091 0.8 0.340042
Target:  5'- gCGAGCGAGUGAGUggugguucgcucGUCGACUcGUCa- -3'
miRNA:   3'- gGCUCGCUCACUCA------------CAGCUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 2091 0.8 0.340042
Target:  5'- gCGAGCGAGUGAGUggugguucgcucGUCGACUcGUCa- -3'
miRNA:   3'- gGCUCGCUCACUCA------------CAGCUGA-CAGcu -5'
25269 3' -53.5 NC_005336.1 + 2147 0.67 0.959223
Target:  5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3'
miRNA:   3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5'
25269 3' -53.5 NC_005336.1 + 2147 0.67 0.959223
Target:  5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3'
miRNA:   3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5'
25269 3' -53.5 NC_005336.1 + 2475 0.79 0.388285
Target:  5'- uCUGAGCGAGUGAGUgagcgaGUUGACUGUUc- -3'
miRNA:   3'- -GGCUCGCUCACUCA------CAGCUGACAGcu -5'
25269 3' -53.5 NC_005336.1 + 2475 0.79 0.388285
Target:  5'- uCUGAGCGAGUGAGUgagcgaGUUGACUGUUc- -3'
miRNA:   3'- -GGCUCGCUCACUCA------CAGCUGACAGcu -5'
25269 3' -53.5 NC_005336.1 + 2545 0.91 0.083162
Target:  5'- uCCGAGUGAGUGAGUgaGUgGACUGUCGAc -3'
miRNA:   3'- -GGCUCGCUCACUCA--CAgCUGACAGCU- -5'
25269 3' -53.5 NC_005336.1 + 2545 0.91 0.083162
Target:  5'- uCCGAGUGAGUGAGUgaGUgGACUGUCGAc -3'
miRNA:   3'- -GGCUCGCUCACUCA--CAgCUGACAGCU- -5'
25269 3' -53.5 NC_005336.1 + 2609 0.68 0.927984
Target:  5'- uCCGGGCGAGUG---GUCGACcGUUa- -3'
miRNA:   3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5'
25269 3' -53.5 NC_005336.1 + 2609 0.68 0.927984
Target:  5'- uCCGGGCGAGUG---GUCGACcGUUa- -3'
miRNA:   3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5'
25269 3' -53.5 NC_005336.1 + 2675 0.71 0.787031
Target:  5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3'
miRNA:   3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5'
25269 3' -53.5 NC_005336.1 + 2675 0.71 0.787031
Target:  5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3'
miRNA:   3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.