miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25269 5' -51.7 NC_005336.1 + 2066 0.73 0.770921
Target:  5'- uCCUCUGCUCUCUUACUCUgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 2066 0.73 0.770921
Target:  5'- uCCUCUGCUCUCUUACUCUgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 137136 0.74 0.720978
Target:  5'- aCUC-ACUCgCUCGCUCaCUCACUCg- -3'
miRNA:   3'- gGAGaUGAGaGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 137136 0.74 0.720978
Target:  5'- aCUC-ACUCgCUCGCUCaCUCACUCg- -3'
miRNA:   3'- gGAGaUGAGaGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 2406 0.77 0.563736
Target:  5'- uCCUCUGCUCU-UCACUCuCUUACUCc- -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 2406 0.77 0.563736
Target:  5'- uCCUCUGCUCU-UCACUCuCUUACUCc- -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 1808 0.77 0.563736
Target:  5'- uUCUCUACUCUCUCACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 1808 0.77 0.563736
Target:  5'- uUCUCUACUCUCUCACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 2593 0.78 0.482712
Target:  5'- uCCUCUGCUCUCUUACUCCggGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 2593 0.78 0.482712
Target:  5'- uCCUCUGCUCUCUUACUCCggGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 1753 0.79 0.463314
Target:  5'- uCCUCUACUCUCUCACUCCg------- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagugagac -5'
25269 5' -51.7 NC_005336.1 + 1753 0.79 0.463314
Target:  5'- uCCUCUACUCUCUCACUCCg------- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagugagac -5'
25269 5' -51.7 NC_005336.1 + 2226 0.82 0.340463
Target:  5'- cUCUCUACUCUCUUACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGaGUGAGAc -5'
25269 5' -51.7 NC_005336.1 + 2001 0.82 0.340463
Target:  5'- cUCUCUuCUCUCUUACUCuCUUACUCUGc -3'
miRNA:   3'- -GGAGAuGAGAGAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2001 0.82 0.340463
Target:  5'- cUCUCUuCUCUCUUACUCuCUUACUCUGc -3'
miRNA:   3'- -GGAGAuGAGAGAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2226 0.82 0.340463
Target:  5'- cUCUCUACUCUCUUACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGaGUGAGAc -5'
25269 5' -51.7 NC_005336.1 + 2452 0.82 0.302683
Target:  5'- uCCUCUACUCU-UCGCUCuCUUGCUCUGa -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2283 0.82 0.302683
Target:  5'- cUCUCUACUCUCU-ACUCuCUUACUCUGa -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2452 0.82 0.302683
Target:  5'- uCCUCUACUCU-UCGCUCuCUUGCUCUGa -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2283 0.82 0.302683
Target:  5'- cUCUCUACUCUCU-ACUCuCUUACUCUGa -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAG-GAGUGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.