miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25269 5' -51.7 NC_005336.1 + 25140 0.66 0.985805
Target:  5'- gCCUUUGCUCacgcgCUCGCUgCCgccgccgUCACUCa- -3'
miRNA:   3'- -GGAGAUGAGa----GAGUGA-GG-------AGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 2255 0.72 0.808561
Target:  5'- cUCUCUACUCUCU-ACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAGGaGUGAGAc -5'
25269 5' -51.7 NC_005336.1 + 2355 0.72 0.826396
Target:  5'- uCCUgcACUCUCUUACUCuCUUACUCc- -3'
miRNA:   3'- -GGAgaUGAGAGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 137323 0.7 0.915576
Target:  5'- -gUCaACUCgCUCACUCaCUCGCUCa- -3'
miRNA:   3'- ggAGaUGAGaGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 105398 0.68 0.959296
Target:  5'- aCCUCUcgcgACUUUCUaGCUUCUCAgaCUGa -3'
miRNA:   3'- -GGAGA----UGAGAGAgUGAGGAGUgaGAC- -5'
25269 5' -51.7 NC_005336.1 + 2884 0.68 0.959296
Target:  5'- aCUgUugACUUguUCUCACUCuCUCACUCUc -3'
miRNA:   3'- gGAgA--UGAG--AGAGUGAG-GAGUGAGAc -5'
25269 5' -51.7 NC_005336.1 + 137655 0.68 0.962923
Target:  5'- ----cACUCgcgCACUCCUCACUCg- -3'
miRNA:   3'- ggagaUGAGagaGUGAGGAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 99255 0.67 0.966318
Target:  5'- aCCUC-ACUUUCgugCGCUUCUCGgUCUu -3'
miRNA:   3'- -GGAGaUGAGAGa--GUGAGGAGUgAGAc -5'
25269 5' -51.7 NC_005336.1 + 137046 0.66 0.980053
Target:  5'- ----aACUCaCUCACUCuCUCACUCg- -3'
miRNA:   3'- ggagaUGAGaGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 1675 0.73 0.790044
Target:  5'- uUCUCUACUCUCUUACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 2066 0.73 0.770921
Target:  5'- uCCUCUGCUCUCUUACUCUgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 137136 0.74 0.720978
Target:  5'- aCUC-ACUCgCUCGCUCaCUCACUCg- -3'
miRNA:   3'- gGAGaUGAGaGAGUGAG-GAGUGAGac -5'
25269 5' -51.7 NC_005336.1 + 2283 0.82 0.302683
Target:  5'- cUCUCUACUCUCU-ACUCuCUUACUCUGa -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2452 0.82 0.302683
Target:  5'- uCCUCUACUCU-UCGCUCuCUUGCUCUGa -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2001 0.82 0.340463
Target:  5'- cUCUCUuCUCUCUUACUCuCUUACUCUGc -3'
miRNA:   3'- -GGAGAuGAGAGAGUGAG-GAGUGAGAC- -5'
25269 5' -51.7 NC_005336.1 + 2226 0.82 0.340463
Target:  5'- cUCUCUACUCUCUUACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGaGUGAGAc -5'
25269 5' -51.7 NC_005336.1 + 1753 0.79 0.463314
Target:  5'- uCCUCUACUCUCUCACUCCg------- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagugagac -5'
25269 5' -51.7 NC_005336.1 + 2593 0.78 0.482712
Target:  5'- uCCUCUGCUCUCUUACUCCggGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 1808 0.77 0.563736
Target:  5'- uUCUCUACUCUCUCACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25269 5' -51.7 NC_005336.1 + 2406 0.77 0.563736
Target:  5'- uCCUCUGCUCU-UCACUCuCUUACUCc- -3'
miRNA:   3'- -GGAGAUGAGAgAGUGAG-GAGUGAGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.