miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25270 3' -57 NC_005336.1 + 33710 0.65 0.859591
Target:  5'- uUCaCGuCGGAGACGUcgauguacagcgagGACUCgCGCGGGAc -3'
miRNA:   3'- cAG-GC-GUCUUUGCG--------------CUGAG-GCGCCUU- -5'
25270 3' -57 NC_005336.1 + 62178 0.66 0.854142
Target:  5'- -cCCGUAGAGA-GCGAgUuuGUGGAc -3'
miRNA:   3'- caGGCGUCUUUgCGCUgAggCGCCUu -5'
25270 3' -57 NC_005336.1 + 896 0.66 0.854142
Target:  5'- aGUuuGCGGGGAgGCGACccgcccUCCGCGc-- -3'
miRNA:   3'- -CAggCGUCUUUgCGCUG------AGGCGCcuu -5'
25270 3' -57 NC_005336.1 + 95710 0.66 0.854142
Target:  5'- cGUCCGCAGcacGCGCugGGCggcgCCGCGcGGu -3'
miRNA:   3'- -CAGGCGUCuu-UGCG--CUGa---GGCGC-CUu -5'
25270 3' -57 NC_005336.1 + 124880 0.66 0.854142
Target:  5'- -cUCGCGGccGCGCGGCg-CGCGGGc -3'
miRNA:   3'- caGGCGUCuuUGCGCUGagGCGCCUu -5'
25270 3' -57 NC_005336.1 + 896 0.66 0.854142
Target:  5'- aGUuuGCGGGGAgGCGACccgcccUCCGCGc-- -3'
miRNA:   3'- -CAggCGUCUUUgCGCUG------AGGCGCcuu -5'
25270 3' -57 NC_005336.1 + 97044 0.66 0.854142
Target:  5'- -cCCGaaacuGCGCGACUCCGCGc-- -3'
miRNA:   3'- caGGCgucuuUGCGCUGAGGCGCcuu -5'
25270 3' -57 NC_005336.1 + 98630 0.66 0.854142
Target:  5'- -gCCGCAGc-GCGCGAagcgCGCGGAGu -3'
miRNA:   3'- caGGCGUCuuUGCGCUgag-GCGCCUU- -5'
25270 3' -57 NC_005336.1 + 36060 0.66 0.851776
Target:  5'- -gUCGCAGAAgucgaagaGCGCGcGCUCCucgggcggcagcguGCGGAAg -3'
miRNA:   3'- caGGCGUCUU--------UGCGC-UGAGG--------------CGCCUU- -5'
25270 3' -57 NC_005336.1 + 131113 0.66 0.846185
Target:  5'- -gCUGCGGAGgccGCGCGACggggCCGaCGGc- -3'
miRNA:   3'- caGGCGUCUU---UGCGCUGa---GGC-GCCuu -5'
25270 3' -57 NC_005336.1 + 105862 0.66 0.846185
Target:  5'- -gCCGCguGGAGAUGCGcAUUCcCGUGGAc -3'
miRNA:   3'- caGGCG--UCUUUGCGC-UGAG-GCGCCUu -5'
25270 3' -57 NC_005336.1 + 75766 0.66 0.846185
Target:  5'- -gCCGCuGAcgGGCGCGcCgCUGCGGAAg -3'
miRNA:   3'- caGGCGuCU--UUGCGCuGaGGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 66456 0.66 0.846185
Target:  5'- cGUCCucgGCGGgcACGCGGCagugCCGUGcGAAg -3'
miRNA:   3'- -CAGG---CGUCuuUGCGCUGa---GGCGC-CUU- -5'
25270 3' -57 NC_005336.1 + 30563 0.66 0.846185
Target:  5'- aUCCGCgAGuucAACGCGGCgaaCGCGGc- -3'
miRNA:   3'- cAGGCG-UCu--UUGCGCUGag-GCGCCuu -5'
25270 3' -57 NC_005336.1 + 5665 0.66 0.841315
Target:  5'- uGUCCGCggccGGGAGCgccgccagcgucucuGCGAgcgCCGCGGAGg -3'
miRNA:   3'- -CAGGCG----UCUUUG---------------CGCUga-GGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 121308 0.66 0.838031
Target:  5'- cGUCgCGCaAGAAcCGCGACUacgaGCGGGc -3'
miRNA:   3'- -CAG-GCG-UCUUuGCGCUGAgg--CGCCUu -5'
25270 3' -57 NC_005336.1 + 132545 0.66 0.838031
Target:  5'- cUCuCGCGGGAGuccguCGUGGCUCCgcacGCGGAc -3'
miRNA:   3'- cAG-GCGUCUUU-----GCGCUGAGG----CGCCUu -5'
25270 3' -57 NC_005336.1 + 75162 0.66 0.838031
Target:  5'- --gCGCucGGGCGCGGCUCCGCGc-- -3'
miRNA:   3'- cagGCGucUUUGCGCUGAGGCGCcuu -5'
25270 3' -57 NC_005336.1 + 7122 0.66 0.83053
Target:  5'- --aCGCAGAGguGCaGCGGCgugcgcccguacucgCCGCGGAAg -3'
miRNA:   3'- cagGCGUCUU--UG-CGCUGa--------------GGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 25678 0.66 0.829687
Target:  5'- aUCuCGCGGuccacCGCGGuCUCCGCGGc- -3'
miRNA:   3'- cAG-GCGUCuuu--GCGCU-GAGGCGCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.