miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25270 3' -57 NC_005336.1 + 54222 0.66 0.829687
Target:  5'- --aC-CAGGAgcuucuGCGCGuCUCCGCGGAGa -3'
miRNA:   3'- cagGcGUCUU------UGCGCuGAGGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 10615 0.66 0.829687
Target:  5'- -aCCGCGGcgGCGCGcgcgccCUCCGCGucGAAg -3'
miRNA:   3'- caGGCGUCuuUGCGCu-----GAGGCGC--CUU- -5'
25270 3' -57 NC_005336.1 + 42644 0.66 0.829687
Target:  5'- -gCCGCGGAGGucuucgacCGCGGCUCCgGCGu-- -3'
miRNA:   3'- caGGCGUCUUU--------GCGCUGAGG-CGCcuu -5'
25270 3' -57 NC_005336.1 + 25678 0.66 0.829687
Target:  5'- aUCuCGCGGuccacCGCGGuCUCCGCGGc- -3'
miRNA:   3'- cAG-GCGUCuuu--GCGCU-GAGGCGCCuu -5'
25270 3' -57 NC_005336.1 + 9286 0.66 0.828843
Target:  5'- -gCCGCGcGcgGCGCGagagcagGCUCCGCGGc- -3'
miRNA:   3'- caGGCGU-CuuUGCGC-------UGAGGCGCCuu -5'
25270 3' -57 NC_005336.1 + 47328 0.66 0.824594
Target:  5'- -gCCGgAGAugaacaucgugcccgAGCGCGACcUCGCGGAc -3'
miRNA:   3'- caGGCgUCU---------------UUGCGCUGaGGCGCCUu -5'
25270 3' -57 NC_005336.1 + 50498 0.66 0.821163
Target:  5'- -cCCGUGGggGCGCcGCgcccgCgGCGGAAg -3'
miRNA:   3'- caGGCGUCuuUGCGcUGa----GgCGCCUU- -5'
25270 3' -57 NC_005336.1 + 22037 0.66 0.8203
Target:  5'- -cCCGCGGAcaucguuGGCGUcgugGACUCCGCGa-- -3'
miRNA:   3'- caGGCGUCU-------UUGCG----CUGAGGCGCcuu -5'
25270 3' -57 NC_005336.1 + 42015 0.66 0.817704
Target:  5'- cGUCgGCAGGAACGUGAacacguacgccgCCGCuaGGAAg -3'
miRNA:   3'- -CAGgCGUCUUUGCGCUga----------GGCG--CCUU- -5'
25270 3' -57 NC_005336.1 + 29374 0.66 0.817704
Target:  5'- aUCgCGCAGAuAUGCGGCggcgacgccgccgCCGCGGc- -3'
miRNA:   3'- cAG-GCGUCUuUGCGCUGa------------GGCGCCuu -5'
25270 3' -57 NC_005336.1 + 136320 0.67 0.812464
Target:  5'- cUUCGCGGAGGCG-GGCcccgUCCGCGcGAAc -3'
miRNA:   3'- cAGGCGUCUUUGCgCUG----AGGCGC-CUU- -5'
25270 3' -57 NC_005336.1 + 64719 0.67 0.812464
Target:  5'- -cCCGCGcgcGcgGCGCGGCUC-GCGGAc -3'
miRNA:   3'- caGGCGU---CuuUGCGCUGAGgCGCCUu -5'
25270 3' -57 NC_005336.1 + 136320 0.67 0.812464
Target:  5'- cUUCGCGGAGGCG-GGCcccgUCCGCGcGAAc -3'
miRNA:   3'- cAGGCGUCUUUGCgCUG----AGGCGC-CUU- -5'
25270 3' -57 NC_005336.1 + 52601 0.67 0.811585
Target:  5'- -gCUGCGGAacgugaccacgguGACGCGAUUC-GCGGAc -3'
miRNA:   3'- caGGCGUCU-------------UUGCGCUGAGgCGCCUu -5'
25270 3' -57 NC_005336.1 + 46349 0.67 0.8036
Target:  5'- -gCCGCAG----GCGGCgCCGCGGAc -3'
miRNA:   3'- caGGCGUCuuugCGCUGaGGCGCCUu -5'
25270 3' -57 NC_005336.1 + 45753 0.67 0.794578
Target:  5'- -gUCGCAcAGACGCGAUagUGCGGAGg -3'
miRNA:   3'- caGGCGUcUUUGCGCUGagGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 30060 0.67 0.794578
Target:  5'- cGUCCaCGGcgcgcacguGAGCGCGAacaCCGCGGAGa -3'
miRNA:   3'- -CAGGcGUC---------UUUGCGCUga-GGCGCCUU- -5'
25270 3' -57 NC_005336.1 + 71345 0.67 0.785409
Target:  5'- cGUCCGCGGcgGCGCGcC-CgGCGGc- -3'
miRNA:   3'- -CAGGCGUCuuUGCGCuGaGgCGCCuu -5'
25270 3' -57 NC_005336.1 + 127119 0.67 0.785409
Target:  5'- -gCCGCGGGcgcgGACGUGaaugcaacaucGCUCUGCGGGu -3'
miRNA:   3'- caGGCGUCU----UUGCGC-----------UGAGGCGCCUu -5'
25270 3' -57 NC_005336.1 + 133538 0.67 0.785409
Target:  5'- -aCCGCGGccGGCGCGACcuUCCGCuucgaGGAGc -3'
miRNA:   3'- caGGCGUCu-UUGCGCUG--AGGCG-----CCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.