Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25270 | 5' | -64.4 | NC_005336.1 | + | 124689 | 0.66 | 0.526081 |
Target: 5'- cGGC-CCGCGGcgucGGCgGGCGCCgaCCGCu- -3' miRNA: 3'- -CUGaGGCGCCu---CCG-CCGUGG--GGCGuc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 92489 | 0.66 | 0.526081 |
Target: 5'- -uCUCCGgcgugcgcacCGGcGGCGGCAagUCCCGCGa -3' miRNA: 3'- cuGAGGC----------GCCuCCGCCGU--GGGGCGUc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 64069 | 0.66 | 0.526081 |
Target: 5'- -cCUCCGCGGAcGUcucGCugCUCGCGGa -3' miRNA: 3'- cuGAGGCGCCUcCGc--CGugGGGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 13500 | 0.66 | 0.526081 |
Target: 5'- cGGCaCCGCGGAgcgacuccGGCGGCGUCaUCGCGGc -3' miRNA: 3'- -CUGaGGCGCCU--------CCGCCGUGG-GGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 8052 | 0.66 | 0.526081 |
Target: 5'- -cCUCCcugcCGGAGGagcuugaGGCAgCCCCGCGu -3' miRNA: 3'- cuGAGGc---GCCUCCg------CCGU-GGGGCGUc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 39218 | 0.66 | 0.523269 |
Target: 5'- -cCUCCGUGGccGCGGUGCUcgaggaggucuacgCCGCGGa -3' miRNA: 3'- cuGAGGCGCCucCGCCGUGG--------------GGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 58278 | 0.66 | 0.51673 |
Target: 5'- aGGCgCCGCGGAGGUcccGG-AUCUCGUAGu -3' miRNA: 3'- -CUGaGGCGCCUCCG---CCgUGGGGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 35581 | 0.66 | 0.51673 |
Target: 5'- -gUUCCGCGcGAuGGCGuCGCCCUGCu- -3' miRNA: 3'- cuGAGGCGC-CU-CCGCcGUGGGGCGuc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 126310 | 0.66 | 0.514868 |
Target: 5'- cGCUCCGCGGugccguggagucGGCGcuCGCCCgaGCAGa -3' miRNA: 3'- cUGAGGCGCCu-----------CCGCc-GUGGGg-CGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 113966 | 0.66 | 0.507447 |
Target: 5'- cGGCgCCGCGGuacaucGCGGUGCCuuGCGa -3' miRNA: 3'- -CUGaGGCGCCuc----CGCCGUGGggCGUc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 115719 | 0.66 | 0.507447 |
Target: 5'- cGAC-CCGCcguacGAGGCcguGGCGCaCCCGCGc -3' miRNA: 3'- -CUGaGGCGc----CUCCG---CCGUG-GGGCGUc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 9253 | 0.66 | 0.507447 |
Target: 5'- --gUCCaCGGAGGUGaGCACCgCGCuGa -3' miRNA: 3'- cugAGGcGCCUCCGC-CGUGGgGCGuC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 99573 | 0.66 | 0.507447 |
Target: 5'- aGC-CCGUGGAcGcGCGGCACCaCUGCc- -3' miRNA: 3'- cUGaGGCGCCU-C-CGCCGUGG-GGCGuc -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 135960 | 0.66 | 0.507447 |
Target: 5'- cGCUCgGCGGcGGCGcuGCugCgCGCGGc -3' miRNA: 3'- cUGAGgCGCCuCCGC--CGugGgGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 97656 | 0.66 | 0.507447 |
Target: 5'- aGCgaggCCGCGcGccGCGGCGCCUCGgGGu -3' miRNA: 3'- cUGa---GGCGC-CucCGCCGUGGGGCgUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 135960 | 0.66 | 0.507447 |
Target: 5'- cGCUCgGCGGcGGCGcuGCugCgCGCGGc -3' miRNA: 3'- cUGAGgCGCCuCCGC--CGugGgGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 77350 | 0.66 | 0.506522 |
Target: 5'- aGGCgccgCCGCGGgaagugcaggugcGGGcCGaGCGCCgCGCGGg -3' miRNA: 3'- -CUGa---GGCGCC-------------UCC-GC-CGUGGgGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 54056 | 0.66 | 0.503754 |
Target: 5'- --gUCCGCGGAGccagcggagccaacGCGGUcaugaagAUCCUGCAGa -3' miRNA: 3'- cugAGGCGCCUC--------------CGCCG-------UGGGGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 39484 | 0.66 | 0.498235 |
Target: 5'- --gUUCGCGGggaAGGCGGuCACgUCGCGGu -3' miRNA: 3'- cugAGGCGCC---UCCGCC-GUGgGGCGUC- -5' |
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25270 | 5' | -64.4 | NC_005336.1 | + | 25429 | 0.66 | 0.498235 |
Target: 5'- aGCUCCGCGGcgcGGcCGGCgaagGCCUCGUc- -3' miRNA: 3'- cUGAGGCGCCu--CC-GCCG----UGGGGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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