miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25270 5' -64.4 NC_005336.1 + 39218 0.66 0.523269
Target:  5'- -cCUCCGUGGccGCGGUGCUcgaggaggucuacgCCGCGGa -3'
miRNA:   3'- cuGAGGCGCCucCGCCGUGG--------------GGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 77350 0.66 0.506522
Target:  5'- aGGCgccgCCGCGGgaagugcaggugcGGGcCGaGCGCCgCGCGGg -3'
miRNA:   3'- -CUGa---GGCGCC-------------UCC-GC-CGUGGgGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 136407 0.66 0.492744
Target:  5'- cGCggaCGCGGAGGgacgccugcucucgcCGGCguaCCCGCAGg -3'
miRNA:   3'- cUGag-GCGCCUCC---------------GCCGug-GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 13500 0.66 0.526081
Target:  5'- cGGCaCCGCGGAgcgacuccGGCGGCGUCaUCGCGGc -3'
miRNA:   3'- -CUGaGGCGCCU--------CCGCCGUGG-GGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 43447 0.66 0.480042
Target:  5'- aGACgcggCgGCaGAGGCGGUcgGCgCCCGCGa -3'
miRNA:   3'- -CUGa---GgCGcCUCCGCCG--UG-GGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 115719 0.66 0.507447
Target:  5'- cGAC-CCGCcguacGAGGCcguGGCGCaCCCGCGc -3'
miRNA:   3'- -CUGaGGCGc----CUCCG---CCGUG-GGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 135960 0.66 0.507447
Target:  5'- cGCUCgGCGGcGGCGcuGCugCgCGCGGc -3'
miRNA:   3'- cUGAGgCGCCuCCGC--CGugGgGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 64069 0.66 0.526081
Target:  5'- -cCUCCGCGGAcGUcucGCugCUCGCGGa -3'
miRNA:   3'- cuGAGGCGCCUcCGc--CGugGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 92489 0.66 0.526081
Target:  5'- -uCUCCGgcgugcgcacCGGcGGCGGCAagUCCCGCGa -3'
miRNA:   3'- cuGAGGC----------GCCuCCGCCGU--GGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 99573 0.66 0.507447
Target:  5'- aGC-CCGUGGAcGcGCGGCACCaCUGCc- -3'
miRNA:   3'- cUGaGGCGCCU-C-CGCCGUGG-GGCGuc -5'
25270 5' -64.4 NC_005336.1 + 15133 0.66 0.489099
Target:  5'- cGGCUCgCGCGGGuGCaGCACgCCGCc- -3'
miRNA:   3'- -CUGAG-GCGCCUcCGcCGUGgGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 124689 0.66 0.526081
Target:  5'- cGGC-CCGCGGcgucGGCgGGCGCCgaCCGCu- -3'
miRNA:   3'- -CUGaGGCGCCu---CCG-CCGUGG--GGCGuc -5'
25270 5' -64.4 NC_005336.1 + 35581 0.66 0.51673
Target:  5'- -gUUCCGCGcGAuGGCGuCGCCCUGCu- -3'
miRNA:   3'- cuGAGGCGC-CU-CCGCcGUGGGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 58278 0.66 0.51673
Target:  5'- aGGCgCCGCGGAGGUcccGG-AUCUCGUAGu -3'
miRNA:   3'- -CUGaGGCGCCUCCG---CCgUGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 8052 0.66 0.526081
Target:  5'- -cCUCCcugcCGGAGGagcuugaGGCAgCCCCGCGu -3'
miRNA:   3'- cuGAGGc---GCCUCCg------CCGU-GGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 9253 0.66 0.507447
Target:  5'- --gUCCaCGGAGGUGaGCACCgCGCuGa -3'
miRNA:   3'- cugAGGcGCCUCCGC-CGUGGgGCGuC- -5'
25270 5' -64.4 NC_005336.1 + 101412 0.66 0.479141
Target:  5'- uGCUUCGCGGcGGUGGCggacgcgGCCgCGCGc -3'
miRNA:   3'- cUGAGGCGCCuCCGCCG-------UGGgGCGUc -5'
25270 5' -64.4 NC_005336.1 + 94175 0.66 0.480042
Target:  5'- aGAUUCCGCGGu--CGGCGCCggUGCGGg -3'
miRNA:   3'- -CUGAGGCGCCuccGCCGUGGg-GCGUC- -5'
25270 5' -64.4 NC_005336.1 + 26340 0.66 0.480042
Target:  5'- aGCgugaCGCGGucgccGGGCGcGCGCgCCGCGGa -3'
miRNA:   3'- cUGag--GCGCC-----UCCGC-CGUGgGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 25429 0.66 0.498235
Target:  5'- aGCUCCGCGGcgcGGcCGGCgaagGCCUCGUc- -3'
miRNA:   3'- cUGAGGCGCCu--CC-GCCG----UGGGGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.