miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25270 5' -64.4 NC_005336.1 + 107 1.07 0.000663
Target:  5'- cGACUCCGCGGAGGCGGCACCCCGCAGc -3'
miRNA:   3'- -CUGAGGCGCCUCCGCCGUGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 107 1.07 0.000663
Target:  5'- cGACUCCGCGGAGGCGGCACCCCGCAGc -3'
miRNA:   3'- -CUGAGGCGCCUCCGCCGUGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 78925 0.83 0.039609
Target:  5'- gGugUgCGCGGAGGUGGCGCggCCCGCAGa -3'
miRNA:   3'- -CugAgGCGCCUCCGCCGUG--GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 103902 0.77 0.110161
Target:  5'- cGGCaCCGCGGcGGCGGCGCCgcgaCGCAGu -3'
miRNA:   3'- -CUGaGGCGCCuCCGCCGUGGg---GCGUC- -5'
25270 5' -64.4 NC_005336.1 + 136319 0.76 0.112947
Target:  5'- -cCUUCGCGGAGGCGG-GCCCCGUc- -3'
miRNA:   3'- cuGAGGCGCCUCCGCCgUGGGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 136319 0.76 0.112947
Target:  5'- -cCUUCGCGGAGGCGG-GCCCCGUc- -3'
miRNA:   3'- cuGAGGCGCCUCCGCCgUGGGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 38844 0.75 0.131091
Target:  5'- aGAuCUCCGCGGugcGGCGGCuCUCCGCGu -3'
miRNA:   3'- -CU-GAGGCGCCu--CCGCCGuGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 113446 0.75 0.141141
Target:  5'- gGACUCCGCGGc-GCGcGCGCCCgGCGa -3'
miRNA:   3'- -CUGAGGCGCCucCGC-CGUGGGgCGUc -5'
25270 5' -64.4 NC_005336.1 + 42198 0.75 0.144645
Target:  5'- cGAUUCaCGCGGAguucgcgcGGCGGUACCCgCGCAc -3'
miRNA:   3'- -CUGAG-GCGCCU--------CCGCCGUGGG-GCGUc -5'
25270 5' -64.4 NC_005336.1 + 59429 0.75 0.148228
Target:  5'- gGugUCCGCGGAgcGGCuGGCGCUgcgcgCCGCGGa -3'
miRNA:   3'- -CugAGGCGCCU--CCG-CCGUGG-----GGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 134407 0.74 0.151892
Target:  5'- cGGCaUCGCGGAgGGCGGCACgCCGCc- -3'
miRNA:   3'- -CUGaGGCGCCU-CCGCCGUGgGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 40568 0.74 0.171056
Target:  5'- --gUCCGCGaAGGCGGCgucgagcGCCUCGCAGg -3'
miRNA:   3'- cugAGGCGCcUCCGCCG-------UGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 110408 0.74 0.171469
Target:  5'- uGGCggCCGCGGcGGCGGCgucGCCgCCGCAu -3'
miRNA:   3'- -CUGa-GGCGCCuCCGCCG---UGG-GGCGUc -5'
25270 5' -64.4 NC_005336.1 + 123159 0.74 0.175646
Target:  5'- -cCUgCCGcCGGAgGGCGGCGCCUCGCGc -3'
miRNA:   3'- cuGA-GGC-GCCU-CCGCCGUGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 77764 0.73 0.184272
Target:  5'- aACUuuGCGGAGGa-GCAgCCCGCGGu -3'
miRNA:   3'- cUGAggCGCCUCCgcCGUgGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 50485 0.73 0.188724
Target:  5'- cGGCUCCGUagagcccguGGGGGCGcCGCgCCCGCGGc -3'
miRNA:   3'- -CUGAGGCG---------CCUCCGCcGUG-GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 117345 0.72 0.209449
Target:  5'- cGCUCgGCGGGGacguccgagagccgcGUGaGCGCCCCGCGGu -3'
miRNA:   3'- cUGAGgCGCCUC---------------CGC-CGUGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 41156 0.72 0.233186
Target:  5'- ---aUCGCGGAGGCGG-ACUCCGCGc -3'
miRNA:   3'- cugaGGCGCCUCCGCCgUGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 3494 0.72 0.233186
Target:  5'- -cCUCCGCGaAGGCGGCcggcagcggcgGCgCCGCGGg -3'
miRNA:   3'- cuGAGGCGCcUCCGCCG-----------UGgGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 3494 0.72 0.233186
Target:  5'- -cCUCCGCGaAGGCGGCcggcagcggcgGCgCCGCGGg -3'
miRNA:   3'- cuGAGGCGCcUCCGCCG-----------UGgGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.