miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25270 5' -64.4 NC_005336.1 + 15008 0.69 0.33356
Target:  5'- gGGCUCgCGCGGcgcgcGGGCGGCgucggcgcgcGCCCCGgGc -3'
miRNA:   3'- -CUGAG-GCGCC-----UCCGCCG----------UGGGGCgUc -5'
25270 5' -64.4 NC_005336.1 + 63497 0.7 0.286138
Target:  5'- aGGCUCUGaCGGAGGCGGC-CCacauCGCc- -3'
miRNA:   3'- -CUGAGGC-GCCUCCGCCGuGGg---GCGuc -5'
25270 5' -64.4 NC_005336.1 + 1028 0.7 0.292574
Target:  5'- cGCUccCCGCGGucgcGGGCGGCGgCCCGUc- -3'
miRNA:   3'- cUGA--GGCGCC----UCCGCCGUgGGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 127844 0.7 0.312558
Target:  5'- cGGCUgcuggCCGCGGGcGCGG-ACCCCGCGc -3'
miRNA:   3'- -CUGA-----GGCGCCUcCGCCgUGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 57053 0.7 0.319446
Target:  5'- cGCUgCuCGGcGGCGGCACgCCCGUGGg -3'
miRNA:   3'- cUGAgGcGCCuCCGCCGUG-GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 136005 0.7 0.319446
Target:  5'- cGGCUggCCGCGGcgcuGGCGGCcgcggGCCgCGCGGc -3'
miRNA:   3'- -CUGA--GGCGCCu---CCGCCG-----UGGgGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 99717 0.69 0.326447
Target:  5'- uGCUCUGCGacGAGGCGGCcGCCggCGCGGc -3'
miRNA:   3'- cUGAGGCGC--CUCCGCCG-UGGg-GCGUC- -5'
25270 5' -64.4 NC_005336.1 + 21088 0.69 0.326447
Target:  5'- -cUUCCGCGGgccgcGGGC-GCGCgCCCGCGGc -3'
miRNA:   3'- cuGAGGCGCC-----UCCGcCGUG-GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 99858 0.69 0.326447
Target:  5'- cGugUCCGCGcgacuGGGGCucGCGCCCUGCGc -3'
miRNA:   3'- -CugAGGCGC-----CUCCGc-CGUGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 42640 0.71 0.261511
Target:  5'- cGGCgCCGCGGAGGUcuucgaccgcGGCuccggcgugcuGCCCCGCGc -3'
miRNA:   3'- -CUGaGGCGCCUCCG----------CCG-----------UGGGGCGUc -5'
25270 5' -64.4 NC_005336.1 + 99630 0.71 0.261511
Target:  5'- uGCUaugCCGCGGcGuGgGGCACCUCGCGGa -3'
miRNA:   3'- cUGA---GGCGCCuC-CgCCGUGGGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 91843 0.71 0.257969
Target:  5'- cGACUUCGCcgGGAGGcCGGUgggguagcgcacguaGCCgCCGCAGa -3'
miRNA:   3'- -CUGAGGCG--CCUCC-GCCG---------------UGG-GGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 136319 0.76 0.112947
Target:  5'- -cCUUCGCGGAGGCGG-GCCCCGUc- -3'
miRNA:   3'- cuGAGGCGCCUCCGCCgUGGGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 42198 0.75 0.144645
Target:  5'- cGAUUCaCGCGGAguucgcgcGGCGGUACCCgCGCAc -3'
miRNA:   3'- -CUGAG-GCGCCU--------CCGCCGUGGG-GCGUc -5'
25270 5' -64.4 NC_005336.1 + 134407 0.74 0.151892
Target:  5'- cGGCaUCGCGGAgGGCGGCACgCCGCc- -3'
miRNA:   3'- -CUGaGGCGCCU-CCGCCGUGgGGCGuc -5'
25270 5' -64.4 NC_005336.1 + 110408 0.74 0.171469
Target:  5'- uGGCggCCGCGGcGGCGGCgucGCCgCCGCAu -3'
miRNA:   3'- -CUGa-GGCGCCuCCGCCG---UGG-GGCGUc -5'
25270 5' -64.4 NC_005336.1 + 50485 0.73 0.188724
Target:  5'- cGGCUCCGUagagcccguGGGGGCGcCGCgCCCGCGGc -3'
miRNA:   3'- -CUGAGGCG---------CCUCCGCcGUG-GGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 3494 0.72 0.233186
Target:  5'- -cCUCCGCGaAGGCGGCcggcagcggcgGCgCCGCGGg -3'
miRNA:   3'- cuGAGGCGCcUCCGCCG-----------UGgGGCGUC- -5'
25270 5' -64.4 NC_005336.1 + 16346 0.72 0.238637
Target:  5'- -cCUCCGCGGcgGGGUGGCGCgUCaGCAGc -3'
miRNA:   3'- cuGAGGCGCC--UCCGCCGUGgGG-CGUC- -5'
25270 5' -64.4 NC_005336.1 + 55172 0.72 0.238637
Target:  5'- cGACUCCGCGcucucggugugcGAGGuCGGCAuCCCCGa-- -3'
miRNA:   3'- -CUGAGGCGC------------CUCC-GCCGU-GGGGCguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.