miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25272 3' -53.5 NC_005336.1 + 3579 0.66 0.975793
Target:  5'- gCCGAGCagccugcgcagcgagGGGUGcaugguGGUGUUGGCUGUgGu -3'
miRNA:   3'- -GGCUCG---------------CUCAC------UCACAGCUGACAgCu -5'
25272 3' -53.5 NC_005336.1 + 3579 0.66 0.975793
Target:  5'- gCCGAGCagccugcgcagcgagGGGUGcaugguGGUGUUGGCUGUgGu -3'
miRNA:   3'- -GGCUCG---------------CUCAC------UCACAGCUGACAgCu -5'
25272 3' -53.5 NC_005336.1 + 2871 0.66 0.972076
Target:  5'- uCUGAGCGAGuUGAcUGUUGACUuGUUc- -3'
miRNA:   3'- -GGCUCGCUC-ACUcACAGCUGA-CAGcu -5'
25272 3' -53.5 NC_005336.1 + 2871 0.66 0.972076
Target:  5'- uCUGAGCGAGuUGAcUGUUGACUuGUUc- -3'
miRNA:   3'- -GGCUCGCUC-ACUcACAGCUGA-CAGcu -5'
25272 3' -53.5 NC_005336.1 + 121345 0.66 0.972076
Target:  5'- gCCGgcGGCGAGgGAGUcGcUUGGCUGUCu- -3'
miRNA:   3'- -GGC--UCGCUCaCUCA-C-AGCUGACAGcu -5'
25272 3' -53.5 NC_005336.1 + 94440 0.66 0.96276
Target:  5'- aCCGGGCG-GUGAGcucaaUGUCGG-UGUUGu -3'
miRNA:   3'- -GGCUCGCuCACUC-----ACAGCUgACAGCu -5'
25272 3' -53.5 NC_005336.1 + 2147 0.67 0.959223
Target:  5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3'
miRNA:   3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5'
25272 3' -53.5 NC_005336.1 + 2147 0.67 0.959223
Target:  5'- aCCGAGUGAG-GAGUGcgCGAgUGg--- -3'
miRNA:   3'- -GGCUCGCUCaCUCACa-GCUgACagcu -5'
25272 3' -53.5 NC_005336.1 + 2609 0.68 0.927984
Target:  5'- uCCGGGCGAGUG---GUCGACcGUUa- -3'
miRNA:   3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5'
25272 3' -53.5 NC_005336.1 + 2609 0.68 0.927984
Target:  5'- uCCGGGCGAGUG---GUCGACcGUUa- -3'
miRNA:   3'- -GGCUCGCUCACucaCAGCUGaCAGcu -5'
25272 3' -53.5 NC_005336.1 + 1944 0.68 0.922566
Target:  5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3'
miRNA:   3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5'
25272 3' -53.5 NC_005336.1 + 1944 0.68 0.922566
Target:  5'- uCUGAGUGGGUGAGUGU-GAgUGagUGAu -3'
miRNA:   3'- -GGCUCGCUCACUCACAgCUgACa-GCU- -5'
25272 3' -53.5 NC_005336.1 + 1696 0.68 0.911007
Target:  5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3'
miRNA:   3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5'
25272 3' -53.5 NC_005336.1 + 1696 0.68 0.911007
Target:  5'- gCGAGCGAGUGAGUGgUUaACUuGUUa- -3'
miRNA:   3'- gGCUCGCUCACUCAC-AGcUGA-CAGcu -5'
25272 3' -53.5 NC_005336.1 + 2822 0.7 0.870692
Target:  5'- uCCGAGCGAGcGAGU--UGcCUGUUGAc -3'
miRNA:   3'- -GGCUCGCUCaCUCAcaGCuGACAGCU- -5'
25272 3' -53.5 NC_005336.1 + 2822 0.7 0.870692
Target:  5'- uCCGAGCGAGcGAGU--UGcCUGUUGAc -3'
miRNA:   3'- -GGCUCGCUCaCUCAcaGCuGACAGCU- -5'
25272 3' -53.5 NC_005336.1 + 2675 0.71 0.787031
Target:  5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3'
miRNA:   3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5'
25272 3' -53.5 NC_005336.1 + 2675 0.71 0.787031
Target:  5'- gCGAGCGAGUGAGUuaaCGACUuguucuaUCGAg -3'
miRNA:   3'- gGCUCGCUCACUCAca-GCUGAc------AGCU- -5'
25272 3' -53.5 NC_005336.1 + 1769 0.77 0.47703
Target:  5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3'
miRNA:   3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5'
25272 3' -53.5 NC_005336.1 + 1769 0.77 0.47703
Target:  5'- uCCGAGUGAGUggcgagcGAGUGUCGACUcGUUa- -3'
miRNA:   3'- -GGCUCGCUCA-------CUCACAGCUGA-CAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.