miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25272 5' -51.7 NC_005336.1 + 1923 0.66 0.985978
Target:  5'- --aCUugUCUUcUACUCuCUUACUCUGa -3'
miRNA:   3'- ggaGAugAGAGaGUGAG-GAGUGAGAC- -5'
25272 5' -51.7 NC_005336.1 + 1923 0.66 0.985978
Target:  5'- --aCUugUCUUcUACUCuCUUACUCUGa -3'
miRNA:   3'- ggaGAugAGAGaGUGAG-GAGUGAGAC- -5'
25272 5' -51.7 NC_005336.1 + 25140 0.66 0.985805
Target:  5'- gCCUUUGCUCacgcgCUCGCUgCCgccgccgUCACUCa- -3'
miRNA:   3'- -GGAGAUGAGa----GAGUGA-GG-------AGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 137046 0.66 0.980053
Target:  5'- ----aACUCaCUCACUCuCUCACUCg- -3'
miRNA:   3'- ggagaUGAGaGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 137046 0.66 0.980053
Target:  5'- ----aACUCaCUCACUCuCUCACUCg- -3'
miRNA:   3'- ggagaUGAGaGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 99255 0.67 0.966318
Target:  5'- aCCUC-ACUUUCgugCGCUUCUCGgUCUu -3'
miRNA:   3'- -GGAGaUGAGAGa--GUGAGGAGUgAGAc -5'
25272 5' -51.7 NC_005336.1 + 137655 0.68 0.962923
Target:  5'- ----cACUCgcgCACUCCUCACUCg- -3'
miRNA:   3'- ggagaUGAGagaGUGAGGAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 137655 0.68 0.962923
Target:  5'- ----cACUCgcgCACUCCUCACUCg- -3'
miRNA:   3'- ggagaUGAGagaGUGAGGAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 2884 0.68 0.959296
Target:  5'- aCUgUugACUUguUCUCACUCuCUCACUCUc -3'
miRNA:   3'- gGAgA--UGAG--AGAGUGAG-GAGUGAGAc -5'
25272 5' -51.7 NC_005336.1 + 2884 0.68 0.959296
Target:  5'- aCUgUugACUUguUCUCACUCuCUCACUCUc -3'
miRNA:   3'- gGAgA--UGAG--AGAGUGAG-GAGUGAGAc -5'
25272 5' -51.7 NC_005336.1 + 105398 0.68 0.959296
Target:  5'- aCCUCUcgcgACUUUCUaGCUUCUCAgaCUGa -3'
miRNA:   3'- -GGAGA----UGAGAGAgUGAGGAGUgaGAC- -5'
25272 5' -51.7 NC_005336.1 + 137323 0.7 0.915576
Target:  5'- -gUCaACUCgCUCACUCaCUCGCUCa- -3'
miRNA:   3'- ggAGaUGAGaGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 137323 0.7 0.915576
Target:  5'- -gUCaACUCgCUCACUCaCUCGCUCa- -3'
miRNA:   3'- ggAGaUGAGaGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 2355 0.72 0.826396
Target:  5'- uCCUgcACUCUCUUACUCuCUUACUCc- -3'
miRNA:   3'- -GGAgaUGAGAGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 47303 0.72 0.826396
Target:  5'- uCCUCg---CUCUCGCUCUcaUCGCUCUc -3'
miRNA:   3'- -GGAGaugaGAGAGUGAGG--AGUGAGAc -5'
25272 5' -51.7 NC_005336.1 + 2355 0.72 0.826396
Target:  5'- uCCUgcACUCUCUUACUCuCUUACUCc- -3'
miRNA:   3'- -GGAgaUGAGAGAGUGAG-GAGUGAGac -5'
25272 5' -51.7 NC_005336.1 + 2255 0.72 0.808561
Target:  5'- cUCUCUACUCUCU-ACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAGGaGUGAGAc -5'
25272 5' -51.7 NC_005336.1 + 2255 0.72 0.808561
Target:  5'- cUCUCUACUCUCU-ACUCUcUACUCUc -3'
miRNA:   3'- -GGAGAUGAGAGAgUGAGGaGUGAGAc -5'
25272 5' -51.7 NC_005336.1 + 1675 0.73 0.790044
Target:  5'- uUCUCUACUCUCUUACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5'
25272 5' -51.7 NC_005336.1 + 1675 0.73 0.790044
Target:  5'- uUCUCUACUCUCUUACUCCgaGCg--- -3'
miRNA:   3'- -GGAGAUGAGAGAGUGAGGagUGagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.