Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25272 | 5' | -51.7 | NC_005336.1 | + | 1862 | 1.11 | 0.005115 |
Target: 5'- uCCUCUACUCUCUCACUCCUCACUCUGa -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 1862 | 1.11 | 0.005115 |
Target: 5'- uCCUCUACUCUCUCACUCCUCACUCUGa -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2452 | 0.82 | 0.302683 |
Target: 5'- uCCUCUACUCU-UCGCUCuCUUGCUCUGa -3' miRNA: 3'- -GGAGAUGAGAgAGUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2452 | 0.82 | 0.302683 |
Target: 5'- uCCUCUACUCU-UCGCUCuCUUGCUCUGa -3' miRNA: 3'- -GGAGAUGAGAgAGUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2283 | 0.82 | 0.302683 |
Target: 5'- cUCUCUACUCUCU-ACUCuCUUACUCUGa -3' miRNA: 3'- -GGAGAUGAGAGAgUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2283 | 0.82 | 0.302683 |
Target: 5'- cUCUCUACUCUCU-ACUCuCUUACUCUGa -3' miRNA: 3'- -GGAGAUGAGAGAgUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2226 | 0.82 | 0.340463 |
Target: 5'- cUCUCUACUCUCUUACUCUcUACUCUc -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGaGUGAGAc -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2001 | 0.82 | 0.340463 |
Target: 5'- cUCUCUuCUCUCUUACUCuCUUACUCUGc -3' miRNA: 3'- -GGAGAuGAGAGAGUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2226 | 0.82 | 0.340463 |
Target: 5'- cUCUCUACUCUCUUACUCUcUACUCUc -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGaGUGAGAc -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2001 | 0.82 | 0.340463 |
Target: 5'- cUCUCUuCUCUCUUACUCuCUUACUCUGc -3' miRNA: 3'- -GGAGAuGAGAGAGUGAG-GAGUGAGAC- -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 1753 | 0.79 | 0.463314 |
Target: 5'- uCCUCUACUCUCUCACUCCg------- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagugagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 1753 | 0.79 | 0.463314 |
Target: 5'- uCCUCUACUCUCUCACUCCg------- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagugagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2593 | 0.78 | 0.482712 |
Target: 5'- uCCUCUGCUCUCUUACUCCggGCg--- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagUGagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2593 | 0.78 | 0.482712 |
Target: 5'- uCCUCUGCUCUCUUACUCCggGCg--- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagUGagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2406 | 0.77 | 0.563736 |
Target: 5'- uCCUCUGCUCU-UCACUCuCUUACUCc- -3' miRNA: 3'- -GGAGAUGAGAgAGUGAG-GAGUGAGac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 1808 | 0.77 | 0.563736 |
Target: 5'- uUCUCUACUCUCUCACUCCgaGCg--- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagUGagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 1808 | 0.77 | 0.563736 |
Target: 5'- uUCUCUACUCUCUCACUCCgaGCg--- -3' miRNA: 3'- -GGAGAUGAGAGAGUGAGGagUGagac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 2406 | 0.77 | 0.563736 |
Target: 5'- uCCUCUGCUCU-UCACUCuCUUACUCc- -3' miRNA: 3'- -GGAGAUGAGAgAGUGAG-GAGUGAGac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 137136 | 0.74 | 0.720978 |
Target: 5'- aCUC-ACUCgCUCGCUCaCUCACUCg- -3' miRNA: 3'- gGAGaUGAGaGAGUGAG-GAGUGAGac -5' |
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25272 | 5' | -51.7 | NC_005336.1 | + | 137136 | 0.74 | 0.720978 |
Target: 5'- aCUC-ACUCgCUCGCUCaCUCACUCg- -3' miRNA: 3'- gGAGaUGAGaGAGUGAG-GAGUGAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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