miRNA display CGI


Results 1 - 20 of 713 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25274 3' -52.4 NC_005336.1 + 30727 0.66 0.986233
Target:  5'- aGCGcCUCGAGCACcuccUCCAgGcucuccuCGCg -3'
miRNA:   3'- -CGC-GAGCUCGUGcuuaAGGUgCu------GCG- -5'
25274 3' -52.4 NC_005336.1 + 19227 0.66 0.986233
Target:  5'- cCGCcgCGAGCccCGAGUUCaCugGAgGUa -3'
miRNA:   3'- cGCGa-GCUCGu-GCUUAAG-GugCUgCG- -5'
25274 3' -52.4 NC_005336.1 + 14555 0.66 0.986233
Target:  5'- uGUaCUCGAGCACGGucaugUCCucguUGAUGUc -3'
miRNA:   3'- -CGcGAGCUCGUGCUua---AGGu---GCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 17196 0.66 0.986233
Target:  5'- cGCGCcaUCG-GCGCGGccUCCucggGCGGCGg -3'
miRNA:   3'- -CGCG--AGCuCGUGCUuaAGG----UGCUGCg -5'
25274 3' -52.4 NC_005336.1 + 93365 0.66 0.986233
Target:  5'- gGCGUUCauGAGguUGGAgg-CGCGGCGCc -3'
miRNA:   3'- -CGCGAG--CUCguGCUUaagGUGCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 51846 0.66 0.986233
Target:  5'- gGCGCUCG-GCGCcgugcagUCCGcCGcCGCc -3'
miRNA:   3'- -CGCGAGCuCGUGcuua---AGGU-GCuGCG- -5'
25274 3' -52.4 NC_005336.1 + 40053 0.66 0.986233
Target:  5'- aGCGcCUCcucGCGCGAGcaaUCCGCcGCGCc -3'
miRNA:   3'- -CGC-GAGcu-CGUGCUUa--AGGUGcUGCG- -5'
25274 3' -52.4 NC_005336.1 + 92672 0.66 0.986233
Target:  5'- cGCGaCUCGAaCAUGA---CCACG-CGCu -3'
miRNA:   3'- -CGC-GAGCUcGUGCUuaaGGUGCuGCG- -5'
25274 3' -52.4 NC_005336.1 + 116762 0.66 0.986233
Target:  5'- aGCGaaUCGGGUA-GAAgUCCGUGACGCg -3'
miRNA:   3'- -CGCg-AGCUCGUgCUUaAGGUGCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 73047 0.66 0.986233
Target:  5'- cGCGC-CGuGCGCaAGUUCUccuacgcggACGugGCc -3'
miRNA:   3'- -CGCGaGCuCGUGcUUAAGG---------UGCugCG- -5'
25274 3' -52.4 NC_005336.1 + 23210 0.66 0.986233
Target:  5'- gGCGCUgccCGAGCGCGAGUacaucuccuUCC-UGcUGCu -3'
miRNA:   3'- -CGCGA---GCUCGUGCUUA---------AGGuGCuGCG- -5'
25274 3' -52.4 NC_005336.1 + 46334 0.66 0.986233
Target:  5'- gGUGCUCGAGa--GAcagCCgcagGCGGCGCc -3'
miRNA:   3'- -CGCGAGCUCgugCUuaaGG----UGCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 30712 0.66 0.986233
Target:  5'- gGCGgcCUCgGAGUuCGggUUCCGCu-CGCa -3'
miRNA:   3'- -CGC--GAG-CUCGuGCuuAAGGUGcuGCG- -5'
25274 3' -52.4 NC_005336.1 + 55565 0.66 0.986233
Target:  5'- cGUGCUCGAGCA-GAAccccaagUCCGUGAUcgaGCa -3'
miRNA:   3'- -CGCGAGCUCGUgCUUa------AGGUGCUG---CG- -5'
25274 3' -52.4 NC_005336.1 + 124062 0.66 0.986233
Target:  5'- gGCGCUCGcucaGCGAAgagCCcCGGCGa -3'
miRNA:   3'- -CGCGAGCucg-UGCUUaa-GGuGCUGCg -5'
25274 3' -52.4 NC_005336.1 + 69365 0.66 0.986233
Target:  5'- aGCGCcUGGGCGugcCGucUUCCugcCGGCGCu -3'
miRNA:   3'- -CGCGaGCUCGU---GCuuAAGGu--GCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 56398 0.66 0.986233
Target:  5'- cGUGCUCccGUACGcGUUCCcCGAcucCGCg -3'
miRNA:   3'- -CGCGAGcuCGUGCuUAAGGuGCU---GCG- -5'
25274 3' -52.4 NC_005336.1 + 101547 0.66 0.986233
Target:  5'- aCGCccgCGucuGCgGCGAGcUCgGCGACGCg -3'
miRNA:   3'- cGCGa--GCu--CG-UGCUUaAGgUGCUGCG- -5'
25274 3' -52.4 NC_005336.1 + 97699 0.66 0.986233
Target:  5'- aCGCUCGAGCGCag---CCuCGAgggacCGCa -3'
miRNA:   3'- cGCGAGCUCGUGcuuaaGGuGCU-----GCG- -5'
25274 3' -52.4 NC_005336.1 + 20953 0.66 0.986233
Target:  5'- aGCGCUUGcgcaguccAGCGCccAUcUCGCGAUGCg -3'
miRNA:   3'- -CGCGAGC--------UCGUGcuUAaGGUGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.